An integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. RARGE integrates the phenotypes of four Arabidopsis mutant lines (including two loss-of-function and two gain-of-function lines) by mapping descriptions into PO and PATO. RARGE is an updated version of the RIKEN Arabidopsis Genome Encyclopedia (RARGE), a database of fl-cDNAs and Ds transposon mutant lines.

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RARGE classification

  • Plants
    • Arabidopsis thaliana

RARGE specifications

Restrictions to use:
None
Database management system:
MySQL
Data access:
Web user interface
Programming languages:
Perl
Community driven:
No
User data submission:
Not allowed

Publications

  • (Akiyama et al., 2014) RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. Plant & cell physiology.
    PMID: 24272250
  • (Sakurai et al., 2005) RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. Nucleic acids research.
    PMID: 15608280

RARGE support

Maintainer

Credits

Institution(s)

RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan; Graduate School of Medicine, Kyoto University, Kyoto, Japan

Funding source(s)

This work was supported by the Japan Society for the Promotion of Science [a Grant-in-Aid for Young Scientists (B) (18700106)].

Link to literature

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