CLIP-seq (Cross-Linking Immunoprecipitation combined with high-throughput sequencing) is a transcriptomics method to study RNA directly bound to RNA-binding proteins across the entire transcriptome in cell or tissue samples. It is a powerful technique to analyze protein interactions with RNA, map RNA binding protein binding sites, or to identify RNA modifications sites of interest. CLIP-seq software tools are used for data pre-processing and processing, as well as data analysis and visualization.
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