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RIPPER specifications


Unique identifier OMICS_11288
Software type Framework/Library
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data mzXML files
Output data It outputs a comma-delimited file containing analyte signals, and for each, its un-normalized and, optionally, its normalized intensities.
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


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Publication for RIPPER

RIPPER citation


Cold argon oxygen plasma species oxidize and disintegrate capsid protein of feline calicivirus

PLoS One
PMCID: 5864060
PMID: 29566061
DOI: 10.1371/journal.pone.0194618

[…] apsid protein (VP1) of peptide fragments containing detected or proposed oxidized amino acids. Label-free relative quantification of peptides between control and plasma-exposed samples performed with RIPPER software is shown in Spreadsheet S1.Eight unique oxidized peptides were identified in LC-MS/MS spectra of the plasma-exposed sample as compared to those of the control virus (). Representative […]

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RIPPER institution(s)
Department of Biomedical Informatics and Computational Biology, University of Minnesota, Chinahester, MN, USA; University of Minnesota Informatics Institute, University of Minnesota, St Paul, MN, USA; Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, USA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA
RIPPER funding source(s)
This research was funded in part by National Institutes of Health grant 1R01DE017734, National Science Foundation Grant 1147079, and the Doctoral Dissertation Fellowship from the University of Minnesota Graduate School.

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