RISC binder specifications

Information


Unique identifier OMICS_27417
Name RISC binder
Alternative name RNA-induced silencing complex binder
Interface Web user interface
Restrictions to use None
Input format FASTA
Output data A tabular form that displays information about name of the structure, its sequence, position in whole sequence, score of prediction, and Positive (miRNA) or Negative (miRNA*).
Computer skills Basic
Stability Stable
Maintained No

Maintainers


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Publication for RNA-induced silencing complex binder

RISC binder citation

library_books

Genetic variants in microRNA genes: impact on microRNA expression, function, and disease

2015
Front Genet
PMCID: 4439572
PMID: 26052338
DOI: 10.3389/fgene.2015.00186

[…] oter regions on transcription factor binding, the dPORE-miRNA database can be queried (). Algorithms to predict Dicer cleavage patterns and preferential strand loading into RISC, such as PHDcleav and RISC binder (, ) could also be useful to assess the impact of variants. The predicted effect on Dicer cleavage and RISC binding induced by variants is incorporated in the miRvar database (). […]

RISC binder institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India
RISC binder funding source(s)
Supported by the Council of Scientific and Industrial Research (CSIR) and the Department of Biotechnology (DBT), government of India.

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