RiTE-db specifications

Information


Unique identifier OMICS_09703
Name RiTE-db
Alternative name Rice TE Database
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Oryza sativa

Maintainer


  • person_outline Rod A. Wing

Publication for Rice TE Database

RiTE-db citations

 (2)
library_books

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

2018
Genome Biol
PMCID: 5819176
PMID: 29458393
DOI: 10.1186/s13059-018-1392-6

[…] onclusions of this article are included within the article and its additional files. Further data files, including amino acid alignments and phylogeny files as well as BLAST searches against TREP and RiTE-db were deposited in the Figshare database [] (http://dx.doi.org/10.6084/m9.figshare.5769864). The interactive trees are publicly available at http://itol.embl.de under “Sharing data” → “Krasilev […]

library_books

Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

2017
Plant Biotechnol J
PMCID: 5425390
PMID: 27889940
DOI: 10.1111/pbi.12674

[…] nt.The repeat annotation was obtained by merging the output of RepeatMasker and Blaster, a component of the REPET package (Flutre et al., ), using nucleotide libraries (PReDa and RepeatExplorer) from RiTE‐db (Copetti et al., ) and an in‐house curated collection of transposable element (TE) proteins. Additionally, for each of the two species, a custom repeat library was developed with RepeatExplore […]

RiTE-db institution(s)
Arizona Genomics Institute, BIO5 Institute and School of Plant Sciences, University of Arizona, Tucson, AZ, USA

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