RiVIERA-MT specifications

Information


Unique identifier OMICS_13965
Name RiVIERA-MT
Alternative name Risk Variant Inference using Epigenomic Reference Annotations to predict Multiple Trait-causing mutations
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data GWAS summary association statistics in one or more traits (Z-scores), linkage disequilibrium (LD) either from the GWAS cohort or reference panel from 1000 Genome consortium, functional annotation matrix (binary or continuous) for each SNP
Output data Simulated marginal summary statistics, causal status of each SNP, causal status of each epigenomic annotations
Operating system Unix/Linux, Mac OS
Programming languages R
Computer skills Advanced
Version 0.9.3
Stability No
Requirements Rcpp, RcppArmadillo
Maintained No

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Publication for Risk Variant Inference using Epigenomic Reference Annotations to predict Multiple Trait-causing mutations

RiVIERA-MT institution(s)
Computer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology, Cambridge, MA, USA; The Broad Institute of Harvard and MIT, Cambridge, MA, USA

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