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Protocols

RKD specifications

Information


Unique identifier OMICS_02978
Name RKD
Alternative name Rice Kinase Database
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Oryza sativa

Publication for Rice Kinase Database

RKD citations

 (3)
library_books

Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae

2016
Front Plant Sci
PMCID: 5143348
PMID: 28008334
DOI: 10.3389/fpls.2016.01834

[…] ation, including gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotations, was referred by Zhang et al. (). The plant TFDB database was used for analyses of rice TFs, and the rice kinase database was used for the analysis of rice kinase. […]

library_books

Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

2016
PMCID: 4991984
PMID: 27540739
DOI: 10.1186/s12284-016-0106-5

[…] phylogenomics databases have been developed for rice. These include kinase, glycosyltransferase, glycoside hydrolase, transcription factor, transporter, and cytochrome p450 databases (Jung et al. ). Rice kinase database (RKD) was the first of these to be established, and it has provided a basic framework for all others (Dardick et al. ; Jung et al. ). Application of RKD in facilitating functional […]

call_split

Molecular Characterization and Comparative Sequence Analysis of Defense Related Gene, Oryza rufipogon Receptor Like Protein Kinase 1

2012
Int J Mol Sci
PMCID: 3430300
PMID: 22942769
DOI: 10.3390/ijms13079343
call_split See protocol

[…] OrufRPK1 amino acid sequence was used for homology searches against the Rice Kinase Database [,,], Rice Genome Annotation Project database [,] and Gramene Database [,]. A total of 15 orthologous OrufRPK1 gene sequences were selected for phylogenetic analysis (). A maximum […]

Citations

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RKD institution(s)
Department of Plant Pathology, University of California, Davis, CA, USA

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