RLMM statistics

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Citations per year

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Popular tool citations

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Associated diseases

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RLMM specifications

Information


Unique identifier OMICS_00732
Name RLMM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.42.0
Stability Stable
Requirements
stats, graphics, utils, grDevices, MASS, R(>=2.1.0)
Maintained Yes

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Documentation


Publication for RLMM

RLMM in publications

 (13)
PMCID: 3350457
PMID: 22490612
DOI: 10.1186/1755-8166-5-19

[…] from the 102 individuals., to generate the b-allele frequency (baf) plots, copy number analysis of the snp array data was performed using the affymetrix power tools brlmm, a modified version of rlmm [] and the penncnv [] algorithm. these data were subsequently further interpreted and visualized in baf and logr ratio plots by the genocn algorithm []., polymorphic microsatellite markers made […]

PMCID: 3132733
PMID: 21760914
DOI: 10.1371/journal.pone.0021835

[…] human mapping 500 k array set (affymetrix, santa clara, ca, usa). genotyping calls were determined from the fluorescent intensities using the dynamic model (dm) algorithm as well as the b-rlmm (bayesian robust linear model with mahalanobis distance classifier) algorithm . dm calls were used for quality control of the genotyping experiment. brlmm calls were used for the following […]

PMCID: 3153999
PMID: 20200951
DOI: 10.1002/jbmr.36

[…] intensities using the dynamic model-based (dm) algorithm with a 0.33 confidence score setting,() as well as the robust linear model with mahalanobis distance classifier with a bayesian step (b-rlmm) algorithm.() according to affymetrix's guidelines, dm calls were used for quality control. specifically, subjects with dm call rates of less than 93% were subject to regenotyping. finally, 99% […]

PMCID: 2730014
PMID: 19714249
DOI: 10.1371/journal.pone.0006827

[…] using the standard protocol recommended by the manufacturer. genotyping calls were determined from the fluorescent intensities using the dm algorithm with a 0.33 p-value setting as well as the b-rlmm algorithm . dm calls were used for quality control while the b-rlmm calls were used for all subsequent data analysis. b-rlmm clustering was performed with 94 samples per cluster., in our gwas […]

PMCID: 3153387
PMID: 20175129
DOI: 10.1359/jbmr.090726

[…] were determined from the fluorescent intensities using the dynamic modeling (dm) algorithm with a 0.33 p-value setting,() as well as the bayesian robust linear model with mahalanobis distance (b-rlmm) algorithm.() dm calls were used for quality control, whereas the b-rlmm calls were used for all subsequent data analyses. b-rlmm clustering was performed with 94 samples per cluster., following […]


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RLMM institution(s)
Department of Statistics, University of California Berkeley, CA, USA; Walter and Eliza Hall Institute of Medical Research Melbourne, Melbourne, Australia

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