Protocols

rlsim specifications

Information


Unique identifier OMICS_01965
Name rlsim
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Other
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes

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Documentation


Publication for rlsim

rlsim citation

call_split

An integrative method to normalize RNA Seq data

2014
BMC Bioinformatics
PMCID: 4067528
PMID: 24929920
DOI: 10.1186/1471-2105-15-188
call_split See protocol

[…] sequence was then split into 231 genes in the FASTA format, with increasing sizes from 50 bp to 1,200 bp according to an arithmetic progression with common difference of 5. This file was submitted to rlsim []. Default parameters were chosen, except for sequenced fragment range, and total read number (1 million). Three runs were launched, the first with 250–450 (mean 350) bp, the second with 450–65 […]

rlsim institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK

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