RMassBank statistics

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Tool usage distribution map

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Associated diseases

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RMassBank specifications

Information


Unique identifier OMICS_02657
Name RMassBank
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.8.0
Stability Stable
Requirements
methods, gplots, Biobase, S4Vectors, Rcpp, RUnit, RCurl, digest, rjson, XML, MSnbase, mzR, rcdk, yaml, RMassBankData, xcms(>=1.37.1), CAMERA, ontoCAT, enviPat
Maintained Yes

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Documentation


RMassBank in publications

 (2)
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] spectra or simply by typing in spectral features, mass, or targeted compound name. it furthermore allows users to directly extract spectra during data processing through many tools like ramclustr, rmassbank, and mass++. metabolite link (metlin) [] currently contains 961 829 molecules, from which 200 000 have in silico ms/ms data. additionally, over 14 000 metabolites were analyzed, and mass […]

PMCID: 4648992
PMID: 26612985
DOI: 10.1007/s11306-015-0879-3

[…] standards which were measured for the development and validation of masscascade (beisken et al. ). this data was used by m. stravs (eawag, ch), during a training workshop, to demonstrate the use of rmassbank (stravs et al. ) to extract, annotate and recalibrate ms/ms data, and finally create 58 new reference spectra from metabolights (haug et al. ) in massbank (horai et al. )., the deposited […]


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