RMBase specifications

Information


Unique identifier OMICS_10533
Name RMBase
Alternative name RNA Modification Base
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Subtools


  • modAnnotation
  • modMetagene

Maintainers


  • person_outline Jian-Hua Yang
  • person_outline Liang-Hu Qu

Publications for RNA Modification Base

RMBase citations

 (2)
library_books

m6AVar: a database of functional variants involved in m6A modification

2017
Nucleic Acids Res
PMCID: 5753261
PMID: 29036329
DOI: 10.1093/nar/gkx895

[…] from 22 different m6A-seq experiments and constructed MeT-DB, the first comprehensive m6A database of the mammalian transcriptome (). Later, Sun et al. developed the RNA modification database called ‘RMBase’ that includes 226 000 m6A sites and 10 005 m5C sites (). Although the above databases have greatly aided research of m6A functions, there is still no specific resource that would help study of […]

library_books

Recent Advances in Identification of RNA Modifications

2016
Noncoding RNA
PMCID: 5831996
PMID: 29657273
DOI: 10.3390/ncrna3010001

[…] s not only applicable for predicting m6A sites in yeast, but is also able to predict m6A sites in human and mouse transcriptomes, which is superior to both m6Apred and iRNA-Methyl.Benefiting from the RMBase [], Chen et al. proposed the MethyRNA (http://lin.uestc.edu.cn/server/methyrna) to predict m6A sites in both human and mouse transcriptomes [], in which RNA sequences are encoded using the nucl […]

RMBase institution(s)
Key Laboratory of Gene Engineering of the Ministry of Education, Sun Yat-sen University, Guangzhou, China; State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China
RMBase funding source(s)
Supported by the National Key R&D Program of China [2017YFA0504400]; National Natural Science Foundation of China [91440110, 31770879, 31370791, 30900820, 31230042, 31471223, 31771459, 31401975]; Ministry of Science and Technology of China, National Basic Research Program [2011CB811300]; Guangdong Province [2017A030313106, S2013010012457]; The project of Science and Technology New Star in ZhuJiang Guangzhou city [2012J2200025]; Fundamental Research Funds for the Central Universities [2011330003161070, 14lgjc18]; China Postdoctoral Science Foundation [200902348]; Guangdong Province Key Laboratory of Computational Science and the Guangdong Province Computational Science Innovative Research Team.

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