RMBNToolbox specifications

Information


Unique identifier OMICS_21540
Name RMBNToolbox
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data A network model.
Output format SBML
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Beta
Requirements
LibSBML, SBMLToolbox
Maintained Yes

Download


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Versioning


No version available

Maintainers


  • person_outline Tommi Aho
  • person_outline Olli YliHarja

Publication for RMBNToolbox

RMBNToolbox citation

library_books

Assessing and Resolving Model Misspecifications in Metabolic Flux Analysis

2017
PMCID: 5590471
PMID: 28952528
DOI: 10.3390/bioengineering4020048

[…] SI of various sizes (m = 50 to 200 metabolites and n = 55 to 220 reactions) and with different numbers of exchange fluxes (between 25 and 100). More precisely, for each data vector y, we employed the RMBNToolbox (MATLAB) [] to generate a random stoichiometric matrix SI with the desired dimensions and a full column rank, wherein each species participated in at least one reaction. For the specified […]

RMBNToolbox institution(s)
Department of Information Technology, Institute of Signal Processing, Tampere University of Technology, Tampere, Finland; Department of Information Technology, Institute of Mathematics, Tampere University of Technology, Tampere, Finland
RMBNToolbox funding source(s)
Supported by the National Technology Agency of Finland, the Academy of Finland, (application number 213462, Finnish Programme for Centres of Excellence in Research 2006–2011), Tampere Graduate School in Information Science and Engineering, Signe and Ane Gyllenberg Foundation, and Tamperelaisen tutkimustyön tukisäätiö.

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