RME specifications


Unique identifier OMICS_09336
Name RME
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Requirements Argparse, mixtools, reshape, MASS, evir, Bioconductor::preprocessCore
Maintained Yes


  • RNAstructure


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  • person_outline Zhi John Lu <>

Publication for RME

RME institution(s)
MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, Center for Plant Biology and Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, China; Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China; School of Biosciences, University of Exeter, UK Exeter, UK; Department of Biochemistry and Biophysics and Center for RNA Biology, University of Rochester Medical Center, Chinahester, NY, USA
RME funding source(s)
National Key Basic Research Program of China [2012CB316503]; National High-Tech Research and Development Program of China [2014AA021103]; National Natural Science Foundation of China [31271402]; Tsinghua University Initiative Scientific Research Program [2014z21045]; Hong Kong Research Grants Council Early Career Scheme [419612]; National Science Foundation [1339282]; Computing Platform of the National Protein Facilities (Tsinghua University)

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