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Rmodel specifications


Unique identifier OMICS_23180
Name Rmodel
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Maintained No


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Publication for Rmodel

Rmodel citations


Stable isotopes in water vapor and rainwater over Indian sector of Southern Ocean and estimation of fraction of recycled moisture

Sci Rep
PMCID: 5954022
PMID: 29765055
DOI: 10.1038/s41598-018-25522-5

[…] estimated values suggests a variable contribution of recycled moisture fraction. This fraction in terms of percentage can be calculated from the Rayleigh distillation formulation as following,5lnfr=lnRmodel−lnRobs(1/∝−1)×100where fr is the recycled fraction; Robs and Rmodel are observed and modeled isotopic composition of water vapor respectively; α represents the fractionation factor correspondin […]


Causal Inference in the Perception of Verticality

Sci Rep
PMCID: 5882842
PMID: 29615728
DOI: 10.1038/s41598-018-23838-w

[…] Here, distortion of the final response R was attributed to an over- or underestimation of the angle of the rod. This was implemented as a linear transformation of the response random variable: R = βrrmodel, with Var(R)=βr2Var(rmodel). In this version, the scaling parameter (βr) affects the noise parameters (σm). To illustrate, when the response reflects a consistent underestimation of the tilt an […]


State dependent representation of stimulus evoked activity in high density recordings of neural cultures

Sci Rep
PMCID: 5882875
PMID: 29615719
DOI: 10.1038/s41598-018-23853-x

[…] d evaluated how dr depends on TB. We also checked whether the state variable TB affected the mean response to the stimulus 〈rs〉 by estimating how the ratio r/〈rs〉 depends on TB. Finally, we estimated rmodel as the sum of two components, the first one takes into account the multiplicative term that scales the population response at fixed stimulus while the second one takes into account the additive […]


Covariate Selection for Association Screening in Multi Phenotype Genetic studies

Nat Genet
PMCID: 5797835
PMID: 29038595
DOI: 10.1038/ng.3975

[…] bution of each Yj≠i covariate. In brief, we standardized all variables and estimated γl2, the proportion of variance of the outcome explained by each Yj≠i from the marginal models Yi~γjYj≠i, and rmodel2, the total variance of Yi explained by all Yj≠i jointly, from the model Yi~γYj=1…K, j≠i. Then, we derived vij, an approximation of the relative contribution of each Yj≠i to the variance o […]


Refractoriness Accounts for Variable Spike Burst Responses in Somatosensory Cortex

PMCID: 5566798
PMID: 28840189
DOI: 10.1523/ENEURO.0173-17.2017

[…] en the ISIs of the first and the second spike and the second and the third spike in the triplet (rdata). We compared the estimated rdata to the correlation coefficient calculated from surrogate data (rmodel) for the same number of trials, which were generated by the STPM model with parameters fitted to the experimental spike trains. The significance of the differences between correlation coefficie […]


Distinct molecular cues ensure a robust microtubule dependent nuclear positioning in the Drosophila oocyte

Nat Commun
PMCID: 5414183
PMID: 28447612
DOI: 10.1038/ncomms15168

[…] envelope was detoured (black dotted line) in its plane of largest area (equatorial plane), and its geometric centre N1 was determined (). A circular model envelope (red dotted circle) with a radius (Rmodel) equal to the average one observed in the biological sample (black dotted line) was then superimposed. Indentations were defined as the contiguous portions of the detoured envelope (black) with […]

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Rmodel institution(s)
Functional Genomics PhD Program, University of Maine, Orono, ME, USA; Department of Biochemistry, Microbiology and Molecular Biology, University of Maine, Orono, ME, USA; The Jackson Laboratory, Bar Harbor, ME, USA
Rmodel funding source(s)
Supported by the NSF Grant No. DGE-0221625, NIH/NCRR INBRE Maine contract 2 P20 RR16463-04, NSF contract DBI-0331497, NIH grant 1R01GM077206, NIH grant 1R01HD21970, and the University of Maine Graduate School for Biomedical Sciences.

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