RNA 3D Motif Atlas specifications


Unique identifier OMICS_03252
Name RNA 3D Motif Atlas
Restrictions to use None
Maintained Yes


Publication for RNA 3D Motif Atlas

RNA 3D Motif Atlas citations


Trends and challenges in computational RNA biology

Genome Biol
PMCID: 5141647
PMID: 27927225
DOI: 10.1186/s13059-016-1117-7

[…] instead use auxiliary data to bypass the difficult step of molecular simulations. Craig Zirbel (Bowling Green State University, USA) described JAR3D, a set of probabilistic models parametrized on the RNA 3D Motif Atlas, that infer new 3D motifs from sequences. Debora Marks (Harvard Medical School, USA) described how evolutionary couplings can be used within global probability models to improve the […]


Tools for macromolecular model building and refinement into electron cryo microscopy reconstructions

PMCID: 4304694
PMID: 25615868
DOI: 10.1107/S1399004714021683

[…] ed by selecting the motif solved at highest resolution for each class. Motifs with fewer than four nucleotides are discarded, leaving approximately 600 unique motifs. The library is updatable for new RNA 3D Motif Atlas releases. RNA Looplib is intended to be used in the same way as the BALBES database for nucleic acid-containing reconstructions.To test the application of the BALBES–MOLREP pipeline […]

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