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The significance and function of posttranscriptional cytosine methylation in poly(A)RNA, attracts great interest but is still poorly understood. High throughput sequencing of RNA treated with bisulfite (RNA-BSseq) or subjected to enrichment techniques like Aza-IP or miCLIP enables transcriptome wide studies of this particular modification at single base pair resolution.
(Rieder et al., 2016) meRanTK: methylated RNA analysis ToolKit. Bioinformatics.