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RNA editing databases | RNA modification data analysis

RNA editing is a post-transcriptional molecular process whereby the information in a genetic message is modified from that in the corresponding DNA template by means of nucleotide substitutions, insertions and/or deletions.Source text:(Picardi et…
GenBank
Dataset

GenBank

A comprehensive database that contains publicly available nucleotide sequences…

A comprehensive database that contains publicly available nucleotide sequences for over 300 000 formally described species. These sequences are obtained primarily through submissions from individual…

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iRNA-AI
Web

iRNA-AI

Identifies the adenosine to inosine editing sites in RNA sequences. iRNA-AI…

Identifies the adenosine to inosine editing sites in RNA sequences. iRNA-AI incorporates the chemical properties of nucleotides and their sliding occurrence density distribution along a RNA sequence…

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REDIportal
Dataset

REDIportal

Offers a collection of RNA editing in humans including more than 4.5 millions…

Offers a collection of RNA editing in humans including more than 4.5 millions of A-to-I events detected in 55 body sites from thousands of RNAseq experiments. REDIportal embeds RADAR database and…

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PAI
Web

PAI Predicting Adenosine to Inosine

Predicts adenosine to inosine editing sites in D. melanogaster. PAI uses pseudo…

Predicts adenosine to inosine editing sites in D. melanogaster. PAI uses pseudo nucleotide compositions. In the tool, RNA sequences are encoded by “pseudo dinucleotide composition” into which six…

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e23D
Dataset

e23D

A database of A-to-I RNA editing sites from human, mouse and fly mapped to…

A database of A-to-I RNA editing sites from human, mouse and fly mapped to evolutionary related protein 3D structures. Genomic coordinates of A-to-I RNA editing sites are converted to protein…

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RADAR
Dataset

RADAR Rigorously Annotated Database of A-to-I RNA Editing

Includes a comprehensive collection of A-to-I RNA editing sites identified in…

Includes a comprehensive collection of A-to-I RNA editing sites identified in humans (Homo sapiens), mice (Mus musculus) and flies (Drosophila melanogaster), together with extensive manually curated…

CirGRDB
Dataset

CirGRDB

Searches, visualizes and interprets circadian genes and multiple…

Searches, visualizes and interprets circadian genes and multiple transcriptional and post-transcriptional regulatory. CirGRDB offers a user-friendly web interface that provides bench researchers…

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dbRES
Dataset

dbRES

A web-oriented comprehensive database for RNA Editing Site. It contains only…

A web-oriented comprehensive database for RNA Editing Site. It contains only experimental validated RNA Editing Site. All the data in dbRES was manually collected from literatures reporting related…

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DARNED
Dataset

DARNED DAtabase of RNa Editing

A database that provides centralized access to available published data related…

A database that provides centralized access to available published data related to RNA editing. RNA editing locations are mapped on the reference human genome.

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RESOPS
Dataset

RESOPS RNA Editing Site on protein 3D Structure

A built database that specializes in displaying RNA editing sites of land plant…

A built database that specializes in displaying RNA editing sites of land plant organelles on protein three-dimensional (3D) structures to help elucidate the mechanisms of RNA editing for gene…

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REDIdb
Dataset

REDIdb

Focuses on the organellar RNA editing process and annotates each editing…

Focuses on the organellar RNA editing process and annotates each editing modification in its biological context. In comparison to other RNA editing databases such as dbRES or EdRNA, REDIdb annotates…

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