RED-ML specifications

Unique identifier:
OMICS_17323
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes
Name:
RNA Editing Detection based on Machine Learning
Interface:
Command line interface
Input data:
The input to RED-ML can be as simple as a single BAM file, while it can also take advantage of matched genomic variant information when available.
Output data:
The output not only contains detected RNA editing sites, but also a confidence score to facilitate downstream filtering.
Programming languages:
C++, Perl
Computer skills:
Advanced
Requirements:
SAMtools package, Perl modules: FindBin, Getopt::Long, File::Basename

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RED-ML distribution

download

RED-ML support

Maintainer

  • Leo Lee <>

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Credits

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Publications

Institution(s)

BGI-Shenzhen, Shenzhen, China; China National GeneBank-Shenzhen, BGI-Shenzhen, Shenzhen, China; Department of Urology, Shanghai Changhai Hospital, Second Military Medical University, Shanghai, China; Department of Biology, University of Copenhagen, Copenhagen, Denmark; James D. Watson Institute of Genome Sciences, Hangzhou, China; Department of Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada

Funding source(s)

This project was supported by the Shenzhen Peacock Plan (NO.KQTD20150330171505310).

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