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RNA editing detection software tools | RNA modification data analysis

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RNA Editing…
Web

RNA Editing Plus

Integrates acquisition, storage, display and analysis of high-throughput RNA…

Integrates acquisition, storage, display and analysis of high-throughput RNA data. RNA Editing Plus allows for seamless integration of multiple, published or locally produced data sets via loading…

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RED-ML
Desktop

RED-ML RNA Editing Detection based on Machine Learning

Performs genome-wide RED based on human RNA-seq data alone. RED-ML is a highly…

Performs genome-wide RED based on human RNA-seq data alone. RED-ML is a highly accurate, speedy and general-purpose tool for RNA editing detection using RNA-seq data. It can take advantage of…

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CURE-Chloroplas…
Web

CURE-Chloroplast

Performs C-to-U RNA editing sites’ prediction in the chloroplasts of seed…

Performs C-to-U RNA editing sites’ prediction in the chloroplasts of seed plants. CURE-Chloroplast provides a platform for processing an entire chloroplast genome sequence according a basic mode and…

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iRNA-AI
Web

iRNA-AI

Identifies the adenosine to inosine editing sites in RNA sequences. iRNA-AI…

Identifies the adenosine to inosine editing sites in RNA sequences. iRNA-AI incorporates the chemical properties of nucleotides and their sliding occurrence density distribution along a RNA sequence…

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PAI
Web

PAI Predicting Adenosine to Inosine

Predicts adenosine to inosine editing sites in D. melanogaster. PAI uses pseudo…

Predicts adenosine to inosine editing sites in D. melanogaster. PAI uses pseudo nucleotide compositions. In the tool, RNA sequences are encoded by “pseudo dinucleotide composition” into which six RNA…

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VIRGO
Web

VIRGO

Identifies Adenosine-to-Inosine (A-to-I) RNA editing sites into genomic…

Identifies Adenosine-to-Inosine (A-to-I) RNA editing sites into genomic sequences. Once you submit DNA sequences, it will analyze them and will highlight putative A-to-I RNA Editing sites. It is…

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PREP Suite
Web

PREP Suite Predictive RNA Editors for Plants

Provides web servers dedicated to predict sites of RNA editing in plant…

Provides web servers dedicated to predict sites of RNA editing in plant organellar genes. PREP Suite identifies sites based on the principle that editing increases protein conservation among species.…

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KISS
Dataset

KISS

Allows the annotation and visualization of sequence data from minicircles and…

Allows the annotation and visualization of sequence data from minicircles and maxicircles as well as cDNA data from gRNAs. KISS is composed of Trypanosoma brucei minicircle and maxicircle sequence…

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