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RNA-eXpress | Annotates novel transcript features in RNA-seq data

Offers a platform for the detection of genomic features into transcripts from next generation RNA sequencing data. RNA-eXpress provides a graphic user interface (GUI) dedicated to the identification of splice variants, transcription start sites, UTRs, introns as well as non-coding RNA features. Users can run feature annotation, comparison, sequence extraction and read counting. The application can supply results as summary statistics, histograms or pie charts.

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RNA-express is a great downloadable tool for handling RNA-sequencing data, annotating novel transcript features with ease

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RNA-eXpress classification

RNA-eXpress specifications

Unique identifier:
Command line interface, Graphical user interface
Input format:
Output format:
Programming languages:
Registration required:
Software type:
Restrictions to use:
Output data:
Some files including annotation, comparison statistics, sequence extraction and features counts.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:

RNA-eXpress distribution


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RNA-eXpress support



  • Paul J. Hertzog <>


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Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, Monash University, Clayton, VIC, Australia

Funding source(s)

Supported by the National Health and Medical Research Council, the ARC Centre of Excellence in Structural and Functional MIcrobial Genomics and the Victorian Government’s Operational Infrastructure Support Program.

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