RNA interference analysis software tools and databases

Functional genomic studies by RNA interference (RNAi) are now widely used to determine gene functions in a variety of cell-based and in vivo model systems (Boutros and Ahringer, 2008). RNAi is triggered by exogenous double-stranded (ds) RNAs causing the degradation of endogenous…

RNA interference steps

Bioinformatics tools

Most recent bioinformatics tools

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Mi-DISCOVERER
Desktop

Mi-DISCOVERER

Detects accurately miRNAs in human genome. Mi-Discoverer is a computational…

Detects accurately miRNAs in human genome. Mi-Discoverer is a computational approach relies on a multiple sequence alignment to predict human miRNAs and successfully applied the program to identify…

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MMCOP
Web

MMCOP miRNA and Methylation CUP Origin Predictor

Enables researchers to predict the origin site of tumor samples of their…

Enables researchers to predict the origin site of tumor samples of their interests. MMCOP is a web-server that consists of classifiers based on Illumina 450k DNA methylation (DNAm) profiles and…

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CCmiR
Desktop

CCmiR Competitive and Cooperative miRNA target prediction

Predicts competitive and cooperative miRNA binding. CCmiR is a hidden Markov…

Predicts competitive and cooperative miRNA binding. CCmiR is a hidden Markov model (HMM) based method that considers the miRNA expression levels and the competition and cooperation of multiple…

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Mirnovo
Web
Desktop

Mirnovo

Predicts novel miRNAs in animals and plants, with or without a reference…

Predicts novel miRNAs in animals and plants, with or without a reference genome. Mirnovo can predict both hairpins and mature miRNAs, providing count data in the latter case. It uses chimira to allow…

Most popular analytical software and databases

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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