RNA interference analysis software tools and databases

RNA interference steps

Bioinformatics tools

Databases

Functional genomic studies by RNA interference (RNAi) are now widely used to determine gene functions in a variety of cell-based and in vivo model systems (Boutros and Ahringer, 2008). RNAi is triggered by exogenous double-stranded (ds) RNAs causing the degradation of endogenous…

RNA interference analysis software tools and databases

Most Recent Tools

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siRNA Wizard
Web

siRNA Wizard

Helps to select siRNA/shRNA sequences targeting gene(s) of interest. siRNA…

Helps to select siRNA/shRNA sequences targeting gene(s) of interest. siRNA Wizard selects siRNA/shRNA sequences that match criteria suggested by studies of RNA interference and which will have the…

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HTSvis
Desktop

HTSvis

Provides an R/Shiny open-source web application for interactive visualization…

Provides an R/Shiny open-source web application for interactive visualization and exploratory analysis of arrayed high-throughput data. Using a light-weight infrastructure suitable for desktop…

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anamiR
Desktop

anamiR

Identify potential interactions of miRNA-target gene interactions from miRNA…

Identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. AnamiR contains functions for statistical test, databases of miRNA-target gene interaction and…

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miRNAsong
Web

miRNAsong miRNAsong: MicroRNA SpONge Generator and tester

Generates miRNA sponge constructs for specific miRNAs and miRNA…

Generates miRNA sponge constructs for specific miRNAs and miRNA families/clusters and tests them for potential binding to miRNAs in selected organisms. miRNAsong is a freely available web-based tool…

Most Popular Tools

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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