RNA interference analysis software tools and databases

RNA interference steps

Bioinformatics tools

Databases

Functional genomic studies by RNA interference (RNAi) are now widely used to determine gene functions in a variety of cell-based and in vivo model systems (Boutros and Ahringer, 2008). RNAi is triggered by exogenous double-stranded (ds) RNAs causing the degradation of endogenous…

RNA interference analysis software tools and databases

Most Recent Tools

A A A
exo-miRExplorer
Dataset

exo-miRExplorer

Provides users with an integrative resource to facilitate detection and…

Provides users with an integrative resource to facilitate detection and analysis of exo-miRNAs. exo-miRExplorer is a database for mining and identifying exo-miRNAs from high-throughput small RNA…

A A A
miRNA-ensemble
Desktop

miRNA-ensemble

Classifies multiple cancers using miRNA expression data. miRNA-ensemble is a…

Classifies multiple cancers using miRNA expression data. miRNA-ensemble is a feature subset-based ensemble method. This method has three major steps: i) generation of multiple miRNA subsets based on…

A A A
miRmine
Dataset

miRmine

Contains a collection of expression profiles from different publicly available…

Contains a collection of expression profiles from different publicly available miRNA-seq datasets and detailed information about the different miRNAs. miRmine has options to retrieve expression…

A A A
miRabel
Web

miRabel

Predicts miRNA targets. miRabel can predict mRNAs that are targeted by several…

Predicts miRNA targets. miRabel can predict mRNAs that are targeted by several miRNAs given as input. The experimental expression level of each miRNAs is taken in account to evaluate their potential…

Most Popular Tools

A A A
MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.