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RNA interference analysis software tools and databases

Functional genomic studies by RNA interference (RNAi) are now widely used to determine gene functions in a variety of cell-based and in vivo model systems (Boutros and Ahringer, 2008). RNAi is triggered by exogenous double-stranded (ds) RNAs causing the degradation of endogenous…

RNA interference steps

Bioinformatics tools

Most recent bioinformatics tools

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miRTaCa
Web

miRTaCa miRNA Target Catcher

Allows miRNA target prediction of untranslated region (UTR) regions.

Allows miRNA target prediction of untranslated region (UTR) regions.

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HuMiTar
Algorithm

HuMiTar

Provides a miRNA target prediction method. HuMiTar is an approach composed of…

Provides a miRNA target prediction method. HuMiTar is an approach composed of two main steps: (i) it first determines candidate targets by investigating 3' untranslated regions (UTR) of a given…

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MCMG
Desktop

MCMG Multiple Cancers for MicroRNA– Gene interactions

Allows users to deduce microRNA– gene interactions with paired expression…

Allows users to deduce microRNA– gene interactions with paired expression profiles. MCMG is a standalone software that is able to detect interactions relative to a specific cancer type or common to…

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GenMir++
Desktop

GenMir++

Considers predicted miRNA regulators of an mRNA. GenMir++ evaluates the degree…

Considers predicted miRNA regulators of an mRNA. GenMir++ evaluates the degree to which the expression of the miRNA explains the pattern of downregulation of the mRNA expression levels. The scores…

Most popular analytical software and databases

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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