RNA interference analysis software tools and databases

RNA interference steps

Bioinformatics tools

Databases

Functional genomic studies by RNA interference (RNAi) are now widely used to determine gene functions in a variety of cell-based and in vivo model systems (Boutros and Ahringer, 2008). RNAi is triggered by exogenous double-stranded (ds) RNAs causing the degradation of endogenous…

RNA interference analysis software tools and databases

Most Recent Tools

Desktop app
A A A GUItars GUItars

GUItars

Enables researchers without a programming background to use strictly…

Enables researchers without a programming background to use strictly standardized mean difference (SSMD) as both a plate quality and a hit selection metric to analyze large data sets. GUItars is…

Web app
A A A microRNA Discovery microRNA Discovery

miRDis microRNA Discovery

Supports the annotation and expression profiling data of known host miRNAs and…

Supports the annotation and expression profiling data of known host miRNAs and the detection of novel miRNAs, other noncoding RNAs, and the exogenous miRNAs from dietary species. miRDis is a small…

A A A miRNA algorithmic… miRNA algorithmic network database

miRandb miRNA algorithmic network database

Presents a survey of more than 180 Web-based miRNA databases which include…

Presents a survey of more than 180 Web-based miRNA databases which include miRNA sequence, discovery, target prediction, target validation, expression and regulation, functions and their roles in…

A A A miRStress Deprecated miRStress

miRStress

Describes the changes in miRNA levels following an array of stress types in…

Describes the changes in miRNA levels following an array of stress types in eukaryotic cells. miRStress can be used to uncover new insight into the biological roles of miRNAs and has the potential to…

Most Popular Tools

Desktop app
A A A MiRdup MiRdup

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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