RNA interference analysis software tools and databases

RNA interference steps

Bioinformatics tools

Databases

Functional genomic studies by RNA interference (RNAi) are now widely used to determine gene functions in a variety of cell-based and in vivo model systems (Boutros and Ahringer, 2008). RNAi is triggered by exogenous double-stranded (ds) RNAs causing the degradation of endogenous…

RNA interference analysis software tools and databases

Most Recent Tools

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Bayesian…
Desktop

Bayesian Relevance Networks

Uses Bayesian reasoning about expression levels to account for the differing…

Uses Bayesian reasoning about expression levels to account for the differing levels of uncertainty in expression measurements between highly- and lowly-expressed entities, and between samples with…

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Antar
Web

Antar

Provides predictions for miRNA targets for human and mouse using two predictive…

Provides predictions for miRNA targets for human and mouse using two predictive models: a model trained from microarray studies following transfection, and a model trained from PAR-CLIP datasets.…

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Raccess
Desktop

Raccess

Computes the accessibility of all the segments of a fixed length for a given…

Computes the accessibility of all the segments of a fixed length for a given RNA sequence when the maximal distance between base pairs is limited to a fixed size W. Raccess is based on an energy…

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desiRm
Web

desiRm

Helps to make siRNA of desired efficacy without changing the target site.…

Helps to make siRNA of desired efficacy without changing the target site. desiRm is a webserver for designing highly effective siRNA for silencing a gene. This tool is a method to design siRNA…

Most Popular Tools

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MiRdup
Desktop

MiRdup

A computational predictor for the identification of the most likely miRNA…

A computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA. MiRdup is based on a random forest classifier…

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