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RNA-ligand interaction tools

RNA molecules have recently become attractive as potential drug targets. The increase of the number of experimentally determined RNA 3D structures enabled structure-based searches for small molecules that can specifically bind to defined sites in…
MORDOR
Desktop

MORDOR MOlecular Recognition with a Driven dynamics OptimizeR

Allows creation of binding site and docking. MORDOR is a software which…

Allows creation of binding site and docking. MORDOR is a software which contains all of the tools for virtual screening. The software can perform the main docking using its own energetic and…

DOT
Desktop

DOT

A software package for docking macromolecules, including proteins, DNA, and RNA.

A software package for docking macromolecules, including proteins, DNA, and RNA.

SMMRNA
Dataset

SMMRNA

An interactive database with special focus on small molecule ligands targeting…

An interactive database with special focus on small molecule ligands targeting RNA.

G4LDB
Dataset

G4LDB G-quadruplex ligands database

A comprehensive and well-organized database of G-quadruplex ligands.…

A comprehensive and well-organized database of G-quadruplex ligands. G-quadruplexes are guanine-rich nucleic acid sequences in human telomeres and gene promoter regions. G4LDB currently contains…

LigandRNA
Web

LigandRNA

Helps for the prediction of RNA–small molecule interactions. LigandRNA is an…

Helps for the prediction of RNA–small molecule interactions. LigandRNA is an independent grid-based program dedicated to scoring and ranking ligand poses in RNA 3D structures using a knowledge-based…

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aRNhAck
Desktop

aRNhAck

Assists users in analyzing non-coding RNA sequences. ARNhAck provides a…

Assists users in analyzing non-coding RNA sequences. ARNhAck provides a software that focuses on the sole biochemical and evolutionary properties of the RNA. It gathers biochemical signal from…

NALDB
Dataset

NALDB Nucleic Acid Ligand Database

A database that provides detailed information about the experimental data of…

A database that provides detailed information about the experimental data of small molecules that were reported to target several types of nucleic acid structures. NALDB is the first ligand database…

Seqmol
Desktop

Seqmol Sequences and molecules

Identifies stable or weak complexes by calculating Kd for formation of…

Identifies stable or weak complexes by calculating Kd for formation of interfaces. SEQMOL is a protein data bank (PDB) structure analysis suite. It can be used to align multiple protein and DNA…

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