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RNA methylation detection software tools | RNA modification data analysis

Just like PTM or PTLM (post-translational modification) in proteins, PTCM (post-transcriptional modification) in RNA plays very important roles in biological processes. Occurring at adenine (A) with the genetic code motif (GAC), N6-methyldenosine…
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SRAMP
Web

SRAMP Sequence-based RNA Adenosine Methylation site Predictor

A mammalian m6A sites predictor. SRAMP achieves promising performance both in…

A mammalian m6A sites predictor. SRAMP achieves promising performance both in cross-validation tests on its training dataset, and in the rigorous independent tests. Another highlighting trait of this…

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BisRNA
Desktop

BisRNA

Analyzes RNA Cytosine-5 Methylation from bisulfite sequencing experiments to…

Analyzes RNA Cytosine-5 Methylation from bisulfite sequencing experiments to distinguish actual cytosine-5 methylation marks from artifacts. BisRNA is a computational approach that integrates…

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RAM-ESVM
Web

RAM-ESVM

Detects m6A sites from Saccharomyces cerevisiae transcriptome, which employed…

Detects m6A sites from Saccharomyces cerevisiae transcriptome, which employed ensemble support vector machine classifiers and novel sequence features. RAM-ESVM is a freely accessible online…

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iRNAm5C-PseDNC
Web
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M6A-HPCS
Web

M6A-HPCS

Predicts N 6 -methyladenosine (m6A) sites. M6A-HPCS was created by using a…

Predicts N 6 -methyladenosine (m6A) sites. M6A-HPCS was created by using a support vector machine (SVM) as prediction engine. It was evaluated employing jackknife tests on benchmark dataset. This…

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M6ATH
Web

M6ATH

Allows to identify m6A sites in A. thaliana. M6ATH is based on a support vector…

Allows to identify m6A sites in A. thaliana. M6ATH is based on a support vector machine (SVM) method that permits to build models in computational genomics and proteomics. It encodes RNA sequences by…

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RNA-MethylPred
Desktop

RNA-MethylPred

Identifies N6-methyladenosine (m6A) modification. RNA-MethylPred uses…

Identifies N6-methyladenosine (m6A) modification. RNA-MethylPred uses Bi-profile Bayes, dinucleotides composition, and k nearest neighbor (KNN) scores to incorporate it in three feature extractions.…

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MethyRNA
Web

MethyRNA

A sequence-based tool for the identification of N6-methyladenosine sites. We…

A sequence-based tool for the identification of N6-methyladenosine sites. We designed a predictor by formulating by formulating RNA sequences with nucleotide chemical property and frequency. In the…

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pRNAm-PC
Web

pRNAm-PC

Predicts N6-methyladenosine sites in RNA sequences via physical-chemical…

Predicts N6-methyladenosine sites in RNA sequences via physical-chemical properties. It was observed via a rigorous jackknife test that, in comparison with the existing predictor for the same…

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TargetM6A
Web

TargetM6A

Predicts new sequence-based m6A site. TargetM6A starts by encoding each target…

Predicts new sequence-based m6A site. TargetM6A starts by encoding each target RNA sequence into a fixed-length feature vector. It obtains an optimized feature subset by applying the incremental…

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RAMPred
Web

RAMPred Rna N1-Adenosine Methylation PREDictor

Identifies N1-methyladenosine (m1A) m1A sites in H. sapiens, M. musculus and S.…

Identifies N1-methyladenosine (m1A) m1A sites in H. sapiens, M. musculus and S. cerevisiae genomes. RAMPred is a support vector machine-based model which encodes RNA sequences using nucleotide…

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CAn
Desktop

CAn CoverageAnalyzer

Allows the visualization and assisted inspection of deep sequencing data in the…

Allows the visualization and assisted inspection of deep sequencing data in the search for RNA modifications. CAn allows the definition of a highly detailed query, based on combinations of arrest…

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m6Apred
Web

m6Apred

A support vector machine based-method is proposed to identify m(6)A sites in…

A support vector machine based-method is proposed to identify m(6)A sites in Saccharomyces cerevisiae genome. In this model, RNA sequences are encoded by their nucleotide chemical property and…

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RNAMethPre
Web

RNAMethPre

Allows to realize query and prediction of mRNA m6A sites. RNAMethPre serves for…

Allows to realize query and prediction of mRNA m6A sites. RNAMethPre serves for studies which concern human, mouse, and mammal. It employs a support vector machine (SVM) methods to build classifiers…

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AthMethPre
Web

AthMethPre

Allows to predict and query of Arabidopsis Thaliana mRNA N6-methyladenosine…

Allows to predict and query of Arabidopsis Thaliana mRNA N6-methyladenosine (m6A) sites. AthMethPre allows to identify all potential sites that can be methylated across the A. Thaliana transcriptome.…

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iRNA-Methyl
Web

iRNA-Methyl

Identifies N6- methyladenosine sites using pseudo nucleotide composition. It…

Identifies N6- methyladenosine sites using pseudo nucleotide composition. It was observed by the rigorous cross-validation test on the benchmark dataset that the accuracy achieved by the predictor in…

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