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Post-transcriptional modification analysis software tools and databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

RNA modification analysis steps

Bioinformatics tools

Most recent bioinformatics tools

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PREP Suite
Web

PREP Suite Predictive RNA Editors for Plants

Provides web servers dedicated to predict sites of RNA editing in plant…

Provides web servers dedicated to predict sites of RNA editing in plant organellar genes. PREP Suite identifies sites based on the principle that editing increases protein conservation among species.…

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KISS
Dataset

KISS

Allows the annotation and visualization of sequence data from minicircles and…

Allows the annotation and visualization of sequence data from minicircles and maxicircles as well as cDNA data from gRNAs. KISS is composed of Trypanosoma brucei minicircle and maxicircle sequence…

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IPSA
Desktop

IPSA Integrative Pipeline for Splicing Analyses

Assists users in splicing analyses. IPSA is a pipeline that quantifies of…

Assists users in splicing analyses. IPSA is a pipeline that quantifies of splice junctions and splice boundaries. It also calculates splicing indices, exon and intron-centric and analyses micro-exons…

iRF
Desktop

iRF iterative Random Forest

Grows feature-weighted Random Forests (RF) to perform soft dimension reduction…

Grows feature-weighted Random Forests (RF) to perform soft dimension reduction of the feature space and stabilize decision paths. iRF searches for high-order feature interactions in three steps: (i)…

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