RNA modification analysis steps

Bioinformatics tools

Databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

Post-transcriptional modification analysis software tools and databases

Most Recent Tools

Desktop app
A A A CoverageAnalyzer CoverageAnalyzer

CAn CoverageAnalyzer

Allows the visualization and assisted inspection of deep sequencing data in the…

Allows the visualization and assisted inspection of deep sequencing data in the search for RNA modifications. CAn allows the definition of a highly detailed query, based on combinations of arrest…

Desktop app
A A A iDeep iDeep

iDeep

A deep learning based framework to fuse heterogeneous data for predicting…

A deep learning based framework to fuse heterogeneous data for predicting RNA-protein interaction sites. iDeep can not only learn the hidden feature patterns from individual source of data, but also…

Web app
A A A SimiRa SimiRa

SimiRa

Compares enriched functional categories such as pathways and GO terms. SimiRa…

Compares enriched functional categories such as pathways and GO terms. SimiRa allows to find similar regulators for given input sets of microRNAs and RBPs. It was developed to act as a…

A A A POST-trAnscriptional… POST-trAnscriptional Regulation

POSTAR POST-trAnscriptional Regulation

A comprehensive resource for easily exploring RBP-target interactions and their…

A comprehensive resource for easily exploring RBP-target interactions and their putative functions and consequences. POSTAR facilitates searching, annotation, visualization, integration, connection,…

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