RNA modification analysis steps

Bioinformatics tools

Databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

Post-transcriptional modification analysis software tools and databases

Most Recent Tools

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cleanUpdTSeq
Desktop

cleanUpdTSeq

Identifies artefactual polyadenylation sites due to internal priming in…

Identifies artefactual polyadenylation sites due to internal priming in homopolymeric stretches of adenines. cleanUpdTSeq classifies flanking 3’ ends derived from oligo-dT-based sequencing as true…

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RAM-ESVM
Web

RAM-ESVM

Detects m6A sites from Saccharomyces cerevisiae transcriptome, which employed…

Detects m6A sites from Saccharomyces cerevisiae transcriptome, which employed ensemble support vector machine classifiers and novel sequence features. RAM-ESVM is a freely accessible online…

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SPLINTER
Desktop

SPLINTER

Analyses alternative splicing sites, interpret outcomes based on sequence…

Analyses alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validation and give visual representation of the event to guide downstream…

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plantAPA
Data

plantAPA

Provides a largest database of alternative polyadenylation (APA) in plants,…

Provides a largest database of alternative polyadenylation (APA) in plants, including rice, Arabidopsis, Medicago truncatula, and Chlamydomonas reinhardtii. PlantAPA is a database for query,…

Most Popular Tools

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RBP-Var
Data

RBP-Var

Provides annotation of functional variants involved in post-transcriptional…

Provides annotation of functional variants involved in post-transcriptional interaction and regulation. RBP-Var provides a user-friendly web interface, allowing users to rapidly find whether SNVs of…

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