Post-transcriptional modification analysis software tools and databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

RNA modification analysis steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

A A A
RNA Editing…
Web

RNA Editing Plus

Integrates acquisition, storage, display and analysis of high-throughput RNA…

Integrates acquisition, storage, display and analysis of high-throughput RNA data. RNA Editing Plus allows for seamless integration of multiple, published or locally produced data sets via loading…

A A A
GSReg
Desktop

GSReg Gene Set Regulation

Permits to recognize Alternative Splicing Events (ASE). GSReg is based on the…

Permits to recognize Alternative Splicing Events (ASE). GSReg is based on the variability of expressions. It considers the ordering of the expressions within the pathway. The tool can perform the…

A A A
Bagheera
Web
Desktop

Bagheera

Predicts the most probable CUG codon translation for a transcriptome or genome…

Predicts the most probable CUG codon translation for a transcriptome or genome assembly. Bagheera uses extensive reference data to proceed. It allows to examine the correct decoding of existing…

A A A
GenDecoder
Web

GenDecoder

Predicts automatically animal mitochondrial genetic codes. GenDecoder returns…

Predicts automatically animal mitochondrial genetic codes. GenDecoder returns detailed information about codon-usage, the frequency of the different amino acids associated with each codon, some…

Most popular analytical software and databases

A A A
RBP-Var
Dataset

RBP-Var

Provides annotation of functional variants involved in post-transcriptional…

Provides annotation of functional variants involved in post-transcriptional interaction and regulation. RBP-Var provides a user-friendly web interface, allowing users to rapidly find whether SNVs of…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.