Post-transcriptional modification analysis software tools and databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

RNA modification analysis steps

Bioinformatics tools

Databases

Post-transcriptional modification analysis software tools and databases

Most Recent Tools

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TargetM6A
Web

TargetM6A

Predicts new sequence-based m6A site. TargetM6A starts by encoding each target…

Predicts new sequence-based m6A site. TargetM6A starts by encoding each target RNA sequence into a fixed-length feature vector. It obtains an optimized feature subset by applying the incremental…

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M6ATH
Web

M6ATH

Allows to identify m6A sites in A. thaliana. M6ATH is based on a support vector…

Allows to identify m6A sites in A. thaliana. M6ATH is based on a support vector machine (SVM) method that permits to build models in computational genomics and proteomics. It encodes RNA sequences by…

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AthMethPre
Web

AthMethPre

Allows to predict and query of Arabidopsis Thaliana mRNA N6-methyladenosine…

Allows to predict and query of Arabidopsis Thaliana mRNA N6-methyladenosine (m6A) sites. AthMethPre allows to identify all potential sites that can be methylated across the A. Thaliana transcriptome.…

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RNAMethPre
Web

RNAMethPre

Allows to realize query and prediction of mRNA m6A sites. RNAMethPre serves for…

Allows to realize query and prediction of mRNA m6A sites. RNAMethPre serves for studies which concern human, mouse, and mammal. It employs a support vector machine (SVM) methods to build classifiers…

Most Popular Tools

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RBP-Var
Dataset

RBP-Var

Provides annotation of functional variants involved in post-transcriptional…

Provides annotation of functional variants involved in post-transcriptional interaction and regulation. RBP-Var provides a user-friendly web interface, allowing users to rapidly find whether SNVs of…

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