RNA modification analysis steps

Bioinformatics tools

Databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

Post-transcriptional modification analysis software tools and databases

Most Recent Tools

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IRBase
Dataset

IRBase

Offers the access of over 2000 human samples. IRBase offers an online database…

Offers the access of over 2000 human samples. IRBase offers an online database of intron retention (IR). This resource permits to assess a specified intron retention event within a tissue/cell type…

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Alternative…
Dataset

Alternative Splicing in SR Genes

Offers the extent of Alternative Splicing (AS) in serine/arginine-rich (SR)…

Offers the extent of Alternative Splicing (AS) in serine/arginine-rich (SR) genes based on a splice graph approach. AS in SR Genes is a database and the result of a large-scale comparative analysis…

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Database for…
Dataset

Database for Bacterial Group II Introns

Provides a catalogue of full-length, non-redundant group II introns present in…

Provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. The Database for Bacterial Group II Introns website is divided into three sections.…

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cleanUpdTSeq
Desktop

cleanUpdTSeq

Identifies artefactual polyadenylation sites due to internal priming in…

Identifies artefactual polyadenylation sites due to internal priming in homopolymeric stretches of adenines. cleanUpdTSeq classifies flanking 3’ ends derived from oligo-dT-based sequencing as true…

Most Popular Tools

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RBP-Var
Dataset

RBP-Var

Provides annotation of functional variants involved in post-transcriptional…

Provides annotation of functional variants involved in post-transcriptional interaction and regulation. RBP-Var provides a user-friendly web interface, allowing users to rapidly find whether SNVs of…

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