Post-transcriptional modification analysis software tools and databases

From a biosynthetic point of view, the roughly 100 known different RNA nucleotide modifications can be easily divided according to their complexity. There are simple chemical transformations, such as addition of a methyl group or bond isomerization of uridine to yield…

RNA modification analysis steps

Bioinformatics tools

Most recent bioinformatics tools

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ORF search &…
Web

ORF search & Translator

Assists user in translation of DNA sequences.

Assists user in translation of DNA sequences.

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Translate
Web

Translate

Allows translation of set of DNA sequences. Translate assists user in…

Allows translation of set of DNA sequences. Translate assists user in procurement of the proteins encoded, the Relative Synonymous Codon Usage (RSCU) values, the amino acid composition, or the Codon…

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3D Ribosomal…
Dataset

3D Ribosomal Modification Maps Database

Allows to visualize modified ribosomal nucleotides of human, Arabidopsis, S.…

Allows to visualize modified ribosomal nucleotides of human, Arabidopsis, S. cerevisiae, H. marismortui, E. coli and T. thermophilus. 3D Ribosomal Modification Maps Database permits nucleotide…

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tRNAmod
Web

tRNAmod

Allows users to predict and classify UMs from tRNA sequences or whole genome of…

Allows users to predict and classify UMs from tRNA sequences or whole genome of any organism. tRNAmod contains two different prediction options available in tRNAmod: (1) Sequence-level prediction and…

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