RNA-Redesign specifications

Information


Unique identifier OMICS_08401
Name RNA-Redesign
Interface Web user interface
Restrictions to use None
Input data RNA structure data
Input format PDB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Joseph Yesselman

Publication for RNA-Redesign

RNA-Redesign citations

 (2)
library_books

Protocols for Molecular Modeling with Rosetta3 and RosettaScripts

2016
Biochemistry
PMCID: 5007558
PMID: 27490953
DOI: 10.1021/acs.biochem.6b00444

[…] RNA can be designed using Rosetta’s RNA Redesign algorithm. It performs fixed backbone design on 3D RNA structures to produce sequences that best stabilize a given 3D conformation. The success rate for a benchmark set of 15 RNA crystal […]

library_books

The Python Project: A Unique Model for Extending Research Opportunities to Undergraduate Students

2014
PMCID: 4255356
PMID: 25452492
DOI: 10.1187/cbe.14-05-0089

[…] ruction and supervised technical practicums. In the second and third months of the course, students work independently to design DNA primers for quantitative polymerase chain reaction (qPCR); isolate RNA, redesign primers, if necessary; and synthesize cDNA (). Learning objectives are centered on the design and successful completion of a novel research project using Burmese python tissues (). Evalu […]

RNA-Redesign institution(s)
Biochemistry Department, Stanford University, Stanford, CA, USA
RNA-Redesign funding source(s)
Burroughs-Welcome Foundation Career Award at the Scientific Interface; National Institutes of Health [R01 R01GM100953]; Stanford Dean's Postdoctoral Fellowship

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