RNA-seq portal specifications


Unique identifier OMICS_12983
Name RNA-seq portal
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Input data Genome data
Input format FASTQ
Output data Genome, gene, and peptide sequences
Output format GTF, BAM
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes


  • Invertebrates
    • Caenorhabditis elegans
  • Mammals
    • Bos taurus
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
  • Vertebrates
    • Gallus gallus


  • person_outline Weizhong Li

Additional information

A registration is needed to access to tools.

Publication for RNA-seq portal

RNA-seq portal institution(s)
The Institute for Genomic Research, La Jolla, CA, USA; USA Department of Agriculture, Agriculture Research Service (USDA-ARS), Animal Genomics and Improvement Laboratory, Beltsville, MD, USA
RNA-seq portal funding source(s)
Supported by the U. S. Department of Agriculture (USDA) National Institute of Food and Agriculture under Award No. 2013-67015-22957.

RNA-seq portal reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RNA-seq portal