RNA-seq portal statistics

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Citations per year

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Popular tool citations

chevron_left Read quality control Differential expression Read alignment Known transcript quantification Reference-based transcriptome assembly Spliced read alignment De novo transcriptome assembly Novel transcript quantification Normalization Bioinformatics workflows chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

RNA-seq portal specifications

Information


Unique identifier OMICS_12983
Name RNA-seq portal
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Input data Genome data
Input format FASTQ
Output data Genome, gene, and peptide sequences
Output format GTF, BAM
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Caenorhabditis elegans
  • Mammals
    • Bos taurus
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
  • Vertebrates
    • Gallus gallus

Maintainer


  • person_outline Weizhong Li <>

Additional information


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Publication for RNA-seq portal

RNA-seq portal institution(s)
The Institute for Genomic Research, La Jolla, CA, USA; USA Department of Agriculture, Agriculture Research Service (USDA-ARS), Animal Genomics and Improvement Laboratory, Beltsville, MD, USA
RNA-seq portal funding source(s)
Supported by the U. S. Department of Agriculture (USDA) National Institute of Food and Agriculture under Award No. 2013-67015-22957.

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