RNA structure analysis software tools and databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis steps

Bioinformatics tools

Databases

RNA structure analysis software tools and databases

Most Recent Tools

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JNSViewer
Web

JNSViewer JavaScript-based Nucleotide Sequence secondary structure Viewer

Offers a web interface that can present precise connection among nucleotide…

Offers a web interface that can present precise connection among nucleotide sequences, pairing and folding information, biological annotations, and secondary structure graphs. JNSViewer is a web…

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iDeepS
Desktop

iDeepS

Infers both sequence and structure preferences of RNA-binding proteins (RBPs).…

Infers both sequence and structure preferences of RNA-binding proteins (RBPs). iDeepS is a deep learning method which consists of convolutional neural networks (CNNs) and a Bidirectional Long Short…

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Advanced_multil…
Desktop

Advanced_multiloops

Predicts RNA secondary structure. Advanced_multiloops permits to avoid isolated…

Predicts RNA secondary structure. Advanced_multiloops permits to avoid isolated base pairs. It includes the free energy change contributions of coaxial stacking, dangling ends, terminal mismatches,…

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segmentation-fo…
Desktop

segmentation-fold

Predicts RNA 2D-structure with an extended version of the Zuker algorithm.…

Predicts RNA 2D-structure with an extended version of the Zuker algorithm. segmentation-fold is a bioinformatics application implemented in C++ that contains two structure elements: the segment and…

Curators for RNA structure analysis

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