RNA structure analysis software tools and databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

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classSNitch
Desktop

classSNitch

Recognizes RNA structure change in large amounts of Selective 20 Hydroxyl…

Recognizes RNA structure change in large amounts of Selective 20 Hydroxyl Acylation by Primer Extension (SHAPE) data. classSNitch provides methods for normalization, noise reduction, and calculating…

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RNAsnap
Web
Desktop

RNAsnap

Provides a method for genome-scale characterization of RNA tertiary structure.…

Provides a method for genome-scale characterization of RNA tertiary structure. RNAsnap yields a robust performance in cross-validation and independent tests. It was developed as a machine-learning…

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G4RNA screener
Desktop

G4RNA screener

Provides a way to identify potential RNA G4. G4RNA screener includes several…

Provides a way to identify potential RNA G4. G4RNA screener includes several tools as G4NN, which is a novel machine learning approach trained on sequences. Its abstract representation of the…

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Dynalign
Desktop

Dynalign

Aligns two sequences and finds a common structure, including multibranch loops.…

Aligns two sequences and finds a common structure, including multibranch loops. Dynalign is a dynamic programming algorithm that uses nearest-neighbor rules for predicting the free energies of…

Curators for RNA structure analysis

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