RNA structure analysis steps

Bioinformatics tools

Databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis software tools and databases

Most Recent Tools

Desktop app
A A A The super-n-motifs… The super-n-motifs model

The super-n-motifs model

Provides an efficient way of comparing secondary structures from linear and…

Provides an efficient way of comparing secondary structures from linear and circular RNA comprising pseudoknots and G-quadruplex (G4s). The super-n-motifs model is based on the idea that similar…

Desktop app
A A A Patched RNA-seq Read… Patched RNA-seq Read Segments'…

PR2S2Clust Patched RNA-seq Read Segments' Structure-oriented Clustering

Extracts features to prepare the secondary structure profiles of the RNA-seq…

Extracts features to prepare the secondary structure profiles of the RNA-seq read segments. PR2S2Clust provides a strategy to employ the profiles to annotate the segments into ncRNA classes using…

Web app
A A A QuadPredict QuadPredict

QuadPredict

Predicts thermal stability and acts as a repository for experimental data from…

Predicts thermal stability and acts as a repository for experimental data from all researchers. QuadPredict is capable of making accurate predictions of thermal stability for new sequences, having…

A A A G-Rich Sequences… G-Rich Sequences DataBase

GRSDB G-Rich Sequences DataBase

A database containing information on the composition and distribution of…

A database containing information on the composition and distribution of putative Quadruplex-forming G-Rich Sequences mapped in average 29 000 eukaryotic pre-mRNA sequences, many of which are…

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