RNA structure analysis software tools and databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis steps

Bioinformatics tools

Most recent bioinformatics tools

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RMDB
Dataset

RMDB RNA mapping database

Provides a RNA mapping repository. RMDB allows users to deposit and search…

Provides a RNA mapping repository. RMDB allows users to deposit and search curated structure mapping measurements in both human- and machine-readable formats. The database offers (i) browsing each…

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SECISaln
Web

SECISaln

Constructs structure-based alignments of an extensive dataset of eukaryotic…

Constructs structure-based alignments of an extensive dataset of eukaryotic SECIS (a stem-loop structure on the 3' UTR of Selenoprotein mRNA transcripts) sequences. SECISaln can be applied on…

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RNAmap2D
Desktop

RNAmap2D

Calculates and visualizes nucleic acid contact and distance maps. RNAmap2D…

Calculates and visualizes nucleic acid contact and distance maps. RNAmap2D intends to improve analyzes of RNA structures which focus on type and location of short-range interactions, without taking…

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RRDB
Dataset

RRDB RNA-RNA Docking Benchmark

RRDB is comprehensive and nonredundant RNA-RNA docking benchmark. This dataset…

RRDB is comprehensive and nonredundant RNA-RNA docking benchmark. This dataset was organized into three different groups according to the interface conformational changes between bound and unbound…

Curators for RNA structure analysis

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