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RNA structure analysis software tools and databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis steps

Bioinformatics tools

Experts in RNA structure analysis

They share and annotate bioinformatics tools

  • Eugene Baulin's avatar image Eugene Baulin's country flag
    Eugene Baulin
    Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino

Most recent bioinformatics tools

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circlncRNAnet
Web
Desktop

circlncRNAnet

Maps the functional networks of long or circular forms of non-coding RNAs…

Maps the functional networks of long or circular forms of non-coding RNAs (ncRNA). circlncRNAnet allows in-depth analyses of ncRNA biology. The software provides three features: (1) a framework for…

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Lcore
Web

Lcore

Classifies a family of protein structures or macromolecular complexes according…

Classifies a family of protein structures or macromolecular complexes according to their geometric core. Lcore is a web server that computes a geometrical core and can be applied to determine the…

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R-Coffee
Web

R-Coffee

Allows alignment of RNA sequences with conserved secondary structures. R-Coffee…

Allows alignment of RNA sequences with conserved secondary structures. R-Coffee which is a part of the T-Coffe web server, allows creation of multiple RNA alignments that automatically take predicted…

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Swellix
Desktop

Swellix

Allows RNA structure analysis. Swellix is a computational method, built on the…

Allows RNA structure analysis. Swellix is a computational method, built on the Crumple algorithm, that combines helix abstraction with a combinatorial approach to RNA structure determination for…

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