RNA structure analysis steps

Bioinformatics tools

Databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis software tools and databases

Most Recent Tools

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Grammar string
Desktop

Grammar string

Implements a consensus structure derivation tool based on grammar string, a…

Implements a consensus structure derivation tool based on grammar string, a noncoding RNA (ncRNA) secondary structure representation. Grammar string encodes an ncRNA’s sequence and secondary…

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RNAfdl
Desktop

RNAfdl RNA force directed layout

Allows manual editing and several drawing styles, as well as a fully automated…

Allows manual editing and several drawing styles, as well as a fully automated conjugate gradients minimization approach to draw more complex structures without user interaction. RNAfdl is a highly…

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WAR
Web

WAR Webserver for Aligning non-coding RNAs

Permits the simultaneously use of a number of state of the art methods for…

Permits the simultaneously use of a number of state of the art methods for performing multiple alignment and secondary structure prediction for noncoding RNA sequences. WAR is useful tool for any…

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BlockMatch
Desktop
Web

BlockMatch

Alignes two blocks, where a block is an RNA multiple sequence alignment with…

Alignes two blocks, where a block is an RNA multiple sequence alignment with the consensus secondary structure of the alignment in Stockholm format. BlockMatch employs a quadratic-time dynamic…

Curators for RNA structure analysis

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