RNA structure analysis steps

Bioinformatics tools

Databases

RNA structures can be described at the two-dimensional (2D) and three-dimensional (3D) levels, respectively. A 2D structure is defined by the base pairs contained in the structure. Helices and loops, as defined by the base pairs contained in the structure, can be…

RNA structure analysis software tools and databases

Most Recent Tools

MultiRNAFold
Desktop

MultiRNAFold

Contains software for secondary structure prediction of one, two, or many…

Contains software for secondary structure prediction of one, two, or many interacting RNA or DNA molecules. MultiRNAFold is composed of three pieces of software: SimFold, PairFold and MultiFold.…

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RSmatch
Desktop

RSmatch

Uses for aligning RNA secondary structures and for motif detection. RSmatch is…

Uses for aligning RNA secondary structures and for motif detection. RSmatch is an efficient tool that can find the optimal global or local alignment between two RNA secondary structures using two…

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COVE
Desktop

COVE

Uses as an implementation of stochastic context free grammar methods for RNA…

Uses as an implementation of stochastic context free grammar methods for RNA sequence/structure analysis. COVE is an extremely sensitive tool for database searching for homologous RNAs. It requires…

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CRW
Data

CRW Comparative RNA Web

Disseminates comparative sequence and structure models and data. CRW is an…

Disseminates comparative sequence and structure models and data. CRW is an online RNA sequence and structure information, the result of extensive analysis, interpretation, data collection, and a…

Curators for RNA structure analysis

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