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RNA dynamic quantification software tools | RNA sequencing data analysis

Cellular mRNA levels originate from the combined action of multiple regulatory processes, which can be recapitulated by the rates of pre-mRNA synthesis, pre-mRNA processing and mRNA degradation. Recent experimental and computational advances set the…
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DRiLL
Dataset

DRiLL

Allows to quantify the level, editing sites, and transcription, processing and…

Allows to quantify the level, editing sites, and transcription, processing and degradation rates of each transcript at a splice junction resolution during the lipopolysaccharide (LPS) response of…

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INSPEcT
Desktop
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DTA
Desktop

DTA Dynamic Transcriptome Analysis

Estimates RNA synthesis and decay rates from pre-processed microarray or…

Estimates RNA synthesis and decay rates from pre-processed microarray or RNA-Seq measurements of any organisms obtained via the Dynamic Transcriptome Analysis (DTA) or the comparative DTA (cDTA)…

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pulseR
Desktop

pulseR

Supplies a flexible interface and readily accommodates numerous different…

Supplies a flexible interface and readily accommodates numerous different experimental designs. pulseR models count data with the more appropriate negative-binomial model. It can handle labelled and…

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HALO
Desktop

HALO Half-life Organizer

Allows the precise determination of transcript half-lives from measurements of…

Allows the precise determination of transcript half-lives from measurements of RNA de novo transcription or decay determined with microarrays or RNA-seq. HALO is an extensible Java framework…

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