RNA22 pipeline

RNA22 specifications

Information


Unique identifier OMICS_04094
Name RNA22
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/RNA22

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Isidore Rigoutsos <>

Publication for RNA22

RNA22 IN pipeline

2018
PMCID: 5858504
PMID: 29556360
DOI: 10.7150/thno.22167

[…] targets of mir-590-3p. furthermore, we searched for their "seed sequence" on ccnb1 and cdk1 mrna using mirtarbase, as shown in figure 5a 63. we confirmed this analysis also using microrna.org 64 and rna22 packages 65., aligned sam files were kindly provided by the authors of 40. we converted all of them back to fastq with picard to use our custom analysis pipeline from scratch. three replicates […]

RNA22 institution(s)
Computational Medicine Center, Thomas Jefferson University, Philadelphia, PA, USA
RNA22 funding source(s)
Supported by a William M. Keck Foundation grant award and Thomas Jefferson University.

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