RNA2DMap statistics

Citations per year

Tool usage distribution map

This map represents all the scientific publications referring to RNA2DMap per scientific context

Associated diseases

Popular tool citations

2D structure visualization

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RNA2DMap specifications

Web

Information

Unique identifier	OMICS_18675
Name	RNA2DMap
Software type	Package/Module
Interface	Web user interface
Restrictions to use	None
Computer skills	Basic
Stability	Stable
Requirements	Adobe Flash Player
Maintained	Yes

Maintainers

Robin Gutell
Weijia Xu
Ame Wongsa
Lei Shang
Jamie Cannone

Publication for RNA2DMap

RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure.

2011 IEEE Intern Conf Bioinform Biomed

PMCID: 3440442

PMID: 22983261

DOI: 10.1109/BIBM.2011.60

RNA2DMap citations

(2)

Numerical integration methods and layout improvements in the context of dynamic RNA visualization

2017

BMC Bioinformatics

PMCID: 5450055

PMID: 28558664

DOI: 10.1186/s12859-017-1682-0

[…] loped, and two excellent reviews of them can be found in [, ], with notable examples that are still available including VARNA [], jViz.RNA [–], Forna [], PseudoViewer [–], 4SALE [, ], Assemble2 [, ], RNA2DMap [], R2R [], and R-Chie []. All Visualization software developed for RNA have as their goal to display an informative structure of the RNA molecule, usually focusing on its secondary structure […]

Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes

2010

BMC Genomics

PMCID: 2996981

PMID: 20813041

DOI: 10.1186/1471-2164-11-485

[…] ch exhibit an interactive flash secondary structure browser and tables that reveal all of the secondary and tertiary interactions in the rRNA crystal structures, http://www.rna.ccbb.utexas.edu/SAE/2A/RNA2DMap/index.php, and http://www.rna.ccbb.utexas.edu/SAE/2A/xtal_Info/). Lastly, the ribosomal proteins interact with the rRNA and with one another to stabilize the network of interactions that prov […]

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RNA2DMap institution(s)

Texas Advanced Computing Center The University of Texas at Austin Austin, TX, USA; School of Information The University of Texas at Austin Austin, TX, USA; Institute for Cellular and Molecular Biology The University of Texas at Austin Austin, TX, USA

RNA2DMap funding source(s)

Supported by NIH grants GM085337 and GM067317 and the Welch Foundation F-1427.

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