RNA2DMap specifications

Information


Unique identifier OMICS_18675
Name RNA2DMap
Software type Package/Module
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Requirements
Adobe Flash Player
Maintained Yes

Maintainers


  • person_outline Robin Gutell
  • person_outline Weijia Xu
  • person_outline Ame Wongsa
  • person_outline Lei Shang
  • person_outline Jamie Cannone

Publication for RNA2DMap

RNA2DMap citations

 (2)
library_books

Numerical integration methods and layout improvements in the context of dynamic RNA visualization

2017
BMC Bioinformatics
PMCID: 5450055
PMID: 28558664
DOI: 10.1186/s12859-017-1682-0

[…] loped, and two excellent reviews of them can be found in [, ], with notable examples that are still available including VARNA [], jViz.RNA [–], Forna [], PseudoViewer [–], 4SALE [, ], Assemble2 [, ], RNA2DMap [], R2R [], and R-Chie []. All Visualization software developed for RNA have as their goal to display an informative structure of the RNA molecule, usually focusing on its secondary structure […]

library_books

Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes

2010
BMC Genomics
PMCID: 2996981
PMID: 20813041
DOI: 10.1186/1471-2164-11-485

[…] ch exhibit an interactive flash secondary structure browser and tables that reveal all of the secondary and tertiary interactions in the rRNA crystal structures, http://www.rna.ccbb.utexas.edu/SAE/2A/RNA2DMap/index.php, and http://www.rna.ccbb.utexas.edu/SAE/2A/xtal_Info/). Lastly, the ribosomal proteins interact with the rRNA and with one another to stabilize the network of interactions that prov […]

RNA2DMap institution(s)
Texas Advanced Computing Center The University of Texas at Austin Austin, TX, USA; School of Information The University of Texas at Austin Austin, TX, USA; Institute for Cellular and Molecular Biology The University of Texas at Austin Austin, TX, USA
RNA2DMap funding source(s)
Supported by NIH grants GM085337 and GM067317 and the Welch Foundation F-1427.

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