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RNABC specifications

Information


Unique identifier OMICS_32992
Name RNABC
Alternative name RNA Backbone Correction
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data An all-atom coordinate file for an RNA crystal structure.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Version 1.11.090519
Stability Stable
Source code URL http://kinemage.biochem.duke.edu/php/downlode-3.php?filename=/../downloads/software/rnabc/rnabc.1.11.090519.src.zip
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Xueyi Wang

Publication for RNA Backbone Correction

RNABC citations

 (3)
library_books

Supervised injection facilities in Canada: past, present, and future

2017
PMCID: 5437687
PMID: 28521829
DOI: 10.1186/s12954-017-0154-1

[…] s of the Dr. Peter Centre were eventually made public following a series of consultations with the provincial professional nursing association, the Registered Nursing Association of British Columbia (RNABC) []. Representatives from RNABC informed the Dr. Peter Centre nurses that, in the opinion of the association, the supervision of injections fell within the scope of acceptable nursing practice e […]

library_books

New tools provide a second look at HDV ribozyme structure, dynamics and cleavage

2014
Nucleic Acids Res
PMCID: 4227795
PMID: 25326328
DOI: 10.1093/nar/gku992

[…] pucker outliers identified by MolProbity were corrected as a result of PHENIX refinement and rebuilding using ERRASER. The pucker corrections were particularly impressive; hand refits and the use of RNABC () were initially successful in correcting only one of these ribose puckers, PDB residue 152, refitting the C3′-endo pucker as C2′-endo, while the other seven ribose puckers were each corrected […]

library_books

Correcting pervasive errors in RNA crystallography through enumerative structure prediction

2012
Nat Methods
PMCID: 3531565
PMID: 23202432
DOI: 10.1038/nmeth.2262

[…] RNABC (v1.11) and RCrane.CLI (v1.01) were combined with PHENIX in the same manner as the ERRASER-PHENIX pipeline, by substituting the ERRASER stage with RNABC and RCrane, respectively. Since RNABC reb […]

Citations

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RNABC institution(s)
Department of Computer Science, UNC Chapel Hill, Chapel Hill, NC, USA; Department of Biochemistry, Duke University, Durham, NC, USA
RNABC funding source(s)
Supported by NIH grant GM-074127.

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