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RNABindRPlus specifications

Information


Unique identifier OMICS_03026
Name RNABindRPlus
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Publication for RNABindRPlus

RNABindRPlus in publications

 (5)
PMCID: 5394118
PMID: 28458662
DOI: 10.3389/fmicb.2017.00650

[…] seem to indicate that virf recognizes the same consensus binding sequence on both dna and rna. to collect some other information on this issue, we performed an in silico analysis using program rnabindrplus (), that is able to predict rna-binding residues from primary protein sequences by combining support vector machine and homology-based methods. the result of this analysis indicates […]

PMCID: 4783013
PMID: 26954256
DOI: 10.1371/journal.pone.0151035

[…] gray value), and intden (integrated density, i.e., the product of area and mean gray value)., potential rna-binding sites were searched in the hex 110 sequence using rnabindr, bindn, pprint, svm and rnabindrplus softwares [–]. we selected the most significant motifs, and only the alignments passing a threshold of 80% were considered as significant. the cnls mapper tool […]

PMCID: 4751978
PMID: 26608810
DOI: 10.1016/j.jmb.2015.11.014

[…] p03610 query and homologous uniref sequences identified by the server. cp secondary structures were taken from the annotation of pdb file 2ms2., rna-binding sites in mps were predicted using the rnabindrplus server with sequence accessions ms2 (p03610), r17 (ef108465), jp501 (aaf67668), phage fr (caa33135), bz13 (fj483837), ku1 (aaf67673), ga (caa27496), c-1-inw (afn37812), hgal1 […]

PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639

[…] possibility of biased prediction by the programs. finally, different criteria are measured to show different aspects of the programs. the webservers assessed include bindn[], bindn+[], rnabindr[], rnabindrplus[], dbs-pred[], dbs-pssm[], kyg[], prbr[], pprint[], dnabindprot[], protedna[], displar[], dr_bind1[], aarna[], rbscore[], rbrdetector[], dnabind[], xypan[] and rnaprosite […]

PMCID: 4661811
PMID: 26540053
DOI: 10.3390/ijms161125952

[…] rnabindr) and achieved enhanced performance. zhang et al. [] presented an rna-binding residue predictor using solvent accessibility, predicted ss, evolutionary conservation and sequence information. rnabindrplus [] is a recently developed predictor which obviously improved prediction reliability, which combines sequence homology and machine learning methods. recently, cheng et al. [] developed […]


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RNABindRPlus institution(s)
Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA, USA

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