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|Interface||Web user interface|
|Restrictions to use||None|
|Input data||An amino acid sequence.|
Publication for RNABindRPlus
The HEX 110 Hexamerin Is a Cytoplasmic and Nucleolar Protein in the Ovaries of Apis mellifera
[…] Potential RNA-binding sites were searched in the HEX 110 sequence using RNABindR, BindN, PPRint, SVM and RNABindRPlus softwares [–]. We selected the most significant motifs, and only the alignments passing a threshold of 80% were considered as significant. The cNLS Mapper tool (http://nls-mapper.iab.keio […]
Direct Evidence for Packaging Signal Mediated Assembly of Bacteriophage MS2
[…] ession P03610 query and homologous UniRef sequences identified by the server. CP secondary structures were taken from the annotation of PDB file 2MS2.RNA-binding sites in MPs were predicted using the RNABindRPlus server with sequence accessions MS2 (P03610), R17 (EF108465), JP501 (AAF67668), phage fr (CAA33135), BZ13 (FJ483837), KU1 (AAF67673), GA (CAA27496), C-1-INW (AFN37812), Hgal1 (AFN37816), […]
A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs
[…] Li lab and Xiaoyong Pan provided RNAProSite and xypan prediction results respectively, with default parameter. aaRNA was used by inputting the structure file with default parameters. RNABindR and RNABindRPlus were predicted with default parameters, while removing 95% sequence identity in RNABindRPlus. KYG was predicted with command line using “method_type = 8” option. RBscore_SVM was based on […]
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