RNAbows specifications

Information


Unique identifier OMICS_09288
Name RNAbows
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Daniel P. Aalberts

Publication for RNAbows

RNAbows citation

library_books

Alternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons

2016
Nucleic Acids Res
PMCID: 5224494
PMID: 27566151
DOI: 10.1093/nar/gkw733

[…] SVM-BP tool (). Maximum entropy splice-site scores were calculated as described (). RNA secondary structures were computed using phylogenetic stochastic context-free grammar () and also mfold () and RNAbows () to identify stable structures across conserved U2AF1 regions. The PU (probability of unpaired) values were computed as described () using human reference sequences of the U2AF-regulated hom […]

RNAbows institution(s)
Department of Physics, Williams College, Williamstown, MA, USA

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