RNAcode protocols

RNAcode specifications

Information


Unique identifier OMICS_05866
Name RNAcode
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Publication for RNAcode

RNAcode IN pipelines

 (2)
2016
PMCID: 4731934
PMID: 26821746
DOI: 10.1186/s13059-016-0873-8

[…] mrna annotation. we discarded annotated gencode-v19 pseudogene transcripts. to remove potential protein/peptide-coding transcripts, we estimated transcript protein-coding capability using rnacode [60] and cpc [61]. we adjusted the criteria for the output of the protein-coding potential estimation pipeline (rnacode score <18, cpc score <1.6) by analyzing well-known lncrnas […]

2016
PMCID: 4731934
PMID: 26821746
DOI: 10.1186/s13059-016-0873-8

[…] transcripts, we estimated transcript protein-coding capability using rnacode [60] and cpc [61]. we adjusted the criteria for the output of the protein-coding potential estimation pipeline (rnacode score <18, cpc score <1.6) by analyzing well-known lncrnas (additional file 2d). we validated these criteria by applying the pipeline to the above public annotations; this identified […]

RNAcode institution(s)
EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK

RNAcode reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RNAcode