RNAdesign specifications


Unique identifier OMICS_04754
Name RNAdesign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Peter F. Stadler

Publication for RNAdesign

RNAdesign citations


Multi objective optimization for RNA design with multiple target secondary structures

BMC Bioinformatics
PMCID: 4559319
PMID: 26335276
DOI: 10.1186/s12859-015-0706-x

[…] on for these four tests, the Ps for the comparisons between MODENA and RNAdesign are statistically significant (< 0.05 /4). Since we tested four comparisons (a comparison between δ e 1s of MODENA and RNAdesign, δ e 2s of MODENA and RNAdesign, δ e 1s of MODENA and Frnakenstein, and δ e 2s of MODENA and Frnakenstein),“0.05 divided by four” was used here as the level of statistical significance for e […]


Complete RNA inverse folding: computational design of functional hammerhead ribozymes

Nucleic Acids Res
PMCID: 4191386
PMID: 25209235
DOI: 10.1093/nar/gku740

[…] llowing one to select solutions of inverse folding that are optimal with respect to various measures (not only ensemble defect), as we have done in this paper.We have additionally tested the programs RNAdesign () and IncaRNAtion (), with the Rfam consensus structure of PLMVd hammerhead as target structure. Only 5.84% [resp. 2.57%] of the sequences returned by RNAdesign using eos(1) [resp. IncaRNAt […]

RNAdesign institution(s)
Department of Theoretical Chemistry, University of Vienna, Wien, Austria

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