RNAEAPath

Predicts low energy barrier folding pathways between conformational structures. RNAEAPath guides the construction of folding pathways through the destruction and formation of RNA stacks using various types of mutation strategies, and integrates them in a well-established computational framework of evolutionary algorithm. These mutation strategies can help reduce the search space and make it easier to jump out of local optima.

RNAEAPath specifications

Desktop

Information

Unique identifier	OMICS_15550
Name	RNAEAPath
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux
Programming languages	C
Computer skills	Advanced
Stability	Stable
Source code URL	http://genome.ucf.edu/RNAEAPath/RNAEAPath-1.0.tar
Maintained	Yes

Versioning

No version available

Maintainer

Shaojie Zhang

Publication for RNAEAPath

Predicting folding pathways between RNA conformational structures guided by RNA stacks

2012 BMC Bioinformatics

PMCID: 3402921

PMID: 22536903

DOI: 10.1186/1471-2105-13-S3-S5

RNAEAPath institution(s)

Department of Electrical Engineering and Computer Science, University of Central Florida, Orlando, FL, USA

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