RNAEditor specifications

Information


Unique identifier OMICS_13082
Name RNAEditor
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Annotation files and databases
Input format FASTQ, BAM
Output data Total number of editing sites, highly edited genes, editing position and editing islands
Output format VCF, GVF, SUMMARY, BED
Operating system Unix/Linux, Mac OS
Programming languages Python, Shell (Bash)
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Requirements BWA, Picard Tools, GATK, Java, Blat, Bedtools, numpy, PyQt4, matplotlib, pysam, numpy
Source code URL https://codeload.github.com/djhn75/RNAEditor/zip/master
Maintained Yes

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Publication for RNAEditor

RNAEditor institution(s)
Cardiovascular Innovation Institute, University of Louisville, Louisville, KY, USA
RNAEditor funding source(s)
The study was supported by the LOEWE Center for Cell and Gene Therapy (State of Hessen), the DFG (SFB834), the German Center for Cardiovascular Research (DZHK).

RNAEditor review

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shumeng duan

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Desktop
very good