RNAEditor statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

RNAEditor specifications

Information


Unique identifier OMICS_13082
Name RNAEditor
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Annotation files and databases
Input format FASTQ, BAM
Output data Total number of editing sites, highly edited genes, editing position and editing islands
Output format VCF, GVF, SUMMARY, BED
Operating system Unix/Linux, Mac OS
Programming languages Python, Shell (Bash)
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
BWA, Picard Tools, GATK, Java, Blat, Bedtools, numpy, PyQt4, matplotlib, pysam, numpy
Source code URL https://codeload.github.com/djhn75/RNAEditor/zip/master
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Shizuka Uchida <>

Publication for RNAEditor

RNAEditor in publication

PMCID: 5902551
PMID: 29662087
DOI: 10.1038/s41598-018-24298-y

[…] snp score (pps). giremi is a software package that utilizes allelic linkage and generalized linear models to distinguish between rna editing sites and genetic variants in a single rna-seq sample. rnaeditor provides an easy-to-use tool to identify rna editing events and developed a clustering algorithm to find editing islands. these methods, which use rna-seq data alone […]


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RNAEditor institution(s)
Cardiovascular Innovation Institute, University of Louisville, Louisville, KY, USA
RNAEditor funding source(s)
The study was supported by the LOEWE Center for Cell and Gene Therapy (State of Hessen), the DFG (SFB834), the German Center for Cardiovascular Research (DZHK).

RNAEditor review

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shumeng duan

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Desktop
very good