RNAEditor statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool RNAEditor
info

Tool usage distribution map

This map represents all the scientific publications referring to RNAEditor per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left RNA editing chevron_right
Want to access the full stats & trends on this tool?

RNAEditor specifications

Information


Unique identifier OMICS_13082
Name RNAEditor
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Annotation files and databases
Input format FASTQ, BAM
Output data Total number of editing sites, highly edited genes, editing position and editing islands
Output format VCF, GVF, SUMMARY, BED
Operating system Unix/Linux, Mac OS
Programming languages Python, Shell (Bash)
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
BWA, Picard Tools, GATK, Java, Blat, Bedtools, numpy, PyQt4, matplotlib, pysam, numpy
Source code URL https://codeload.github.com/djhn75/RNAEditor/zip/master
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Shizuka Uchida

Publication for RNAEditor

RNAEditor citations

 (2)
library_books

Accurate identification of RNA editing sites from primitive sequence with deep neural networks

2018
Sci Rep
PMCID: 5902551
PMID: 29662087
DOI: 10.1038/s41598-018-24298-y

[…] consistently performed better than the four methods. Based on sensitivity, separate samples method was ranked first followed by DeepRed, RNAEditor, Prediction and GIREMI. In terms of validation rate, RNAEditor has best result followed by separate samples method, DeepRed, GIREMI and Prediction method. We ranked the performance of the five methods based on these eight performance indicators, and ave […]

call_split

SPRINT: an SNP free toolkit for identifying RNA editing sites

2017
Bioinformatics
PMCID: 5870768
PMID: 29036410
DOI: 10.1093/bioinformatics/btx473
call_split See protocol

[…] We compare SPRINT with the following four tools on detecting RNA editing. These four tools are JACUSA (), GIREMI (), RNAEditor () and REDItools (). GIREMI is downloaded from https://github.com/zhqingit/giremi. RNAEditor is downloaded from https://github.com/djhn75/RNAEditor. The related tools and annotations for ins […]


Want to access the full list of citations?
RNAEditor institution(s)
Cardiovascular Innovation Institute, University of Louisville, Louisville, KY, USA
RNAEditor funding source(s)
The study was supported by the LOEWE Center for Cell and Gene Therapy (State of Hessen), the DFG (SFB834), the German Center for Cardiovascular Research (DZHK).

RNAEditor review

star_border star_border star_border star_border star_border
star star star star star

shumeng duan

star_border star_border star_border star_border star_border
star star star star star
Desktop
very good