RNAexinv statistics

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Associated diseases

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RNAexinv specifications

Information


Unique identifier OMICS_04761
Name RNAexinv
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Requirements
GNU C compiler
Maintained Yes

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Maintainer


  • person_outline Danny Barash <>

Publication for RNAexinv

RNAexinv in publications

 (2)
PMCID: 5068708
PMID: 27755571
DOI: 10.1371/journal.pone.0164726

[…] structure representation has also been used to predict rna deleterious mutations by rnamute [] and rnamutants []. in addition, a coarse-grained approach is also applied for rna design such as rnaexinv [] and nanofolder []. we demonstrate the utility of the xios approach by classifying a representative set of pseudoknot-including rna structural families that have very low levels […]

PMCID: 4521916
PMID: 26230932
DOI: 10.1371/journal.pone.0134262

[…] considerations have been exhausted for this task. thus, we start from a structure-based approach and use our in-house inverse rna folding program rnafbinv [] (available at http://www.cs.bgu.ac.il/~rnaexinv/rnafbinv) to transform the search task into sequence space. rnafbinv receives as input a secondary structure along with sequence constraints, and outputs a set of designed sequences […]


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RNAexinv institution(s)
Department of Computer Science, Ben Gurion University of the Negev, Beer Sheva, Israel

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