RNAhybrid pipeline
RNAhybrid specifications
Information
| Unique identifier | OMICS_00416 |
|---|---|
| Name | RNAhybrid |
| Interface | Web user interface, Application programming interface |
| Restrictions to use | None |
| Input data | A miRNA sequence or a RNA sequence. |
| Computer skills | Basic |
| Version | 2.1.2 |
| Stability | Stable |
| Source code URL | https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz |
| Maintained | Yes |
Taxon
-
Invertebrates
- Drosophila melanogaster
Maintainer
- person_outline Marc Rehmsmeier <>
Information
| Unique identifier | OMICS_00416 |
|---|---|
| Name | RNAhybrid |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Computer skills | Advanced |
| Stability | Stable |
| Source code URL | https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz |
Taxon
-
Invertebrates
- Drosophila melanogaster
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Publication for RNAhybrid
RNAhybrid IN pipelines
(2)[…] expressed mirnas were identified by the criteria of q-value < 0.005, |log2 (fold-change)| ≥1 and fdr< 0.01., target genes of mirnas of particular interest were predicted using mirnada 27 and rnahybrid 28. functional annotations of mirna target genes were performed by the following database searches: nr (ncbi non-redundant protein sequences), nt (ncbi non-redundant nucleotide sequences), […]
[…] the normalized expression of a certain mirna was all lower than 1 in two libraries, further differential expression analysis was conducted without this mirna for the reason of its low expression., rnahybrid software was performed to predict target gene of mirna in the sequencing. go enrichment analysis in our study was successful at predicted target gene candidates of all differentially […]
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