RNAhybrid pipeline

RNAhybrid specifications

Information


Unique identifier OMICS_00416
Name RNAhybrid
Interface Web user interface, Application programming interface
Restrictions to use None
Input data A miRNA sequence or a RNA sequence.
Computer skills Basic
Version 2.1.2
Stability Stable
Source code URL https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster

Maintainer


  • person_outline Marc Rehmsmeier <>

Information


Unique identifier OMICS_00416
Name RNAhybrid
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Source code URL https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz

Taxon


  • Invertebrates
    • Drosophila melanogaster

Download


Versioning


Add your version

Maintainer


This tool is not maintained anymore.

Publication for RNAhybrid

RNAhybrid IN pipelines

 (2)
2018
PMCID: 5821052
PMID: 29483828
DOI: 10.7150/ijbs.22498

[…] expressed mirnas were identified by the criteria of q-value < 0.005, |log2 (fold-change)| ≥1 and fdr< 0.01., target genes of mirnas of particular interest were predicted using mirnada 27 and rnahybrid 28. functional annotations of mirna target genes were performed by the following database searches: nr (ncbi non-redundant protein sequences), nt (ncbi non-redundant nucleotide sequences), […]

2016
PMCID: 4993730
PMID: 27610292
DOI: 10.1186/s40064-016-2902-1

[…] the normalized expression of a certain mirna was all lower than 1 in two libraries, further differential expression analysis was conducted without this mirna for the reason of its low expression., rnahybrid software was performed to predict target gene of mirna in the sequencing. go enrichment analysis in our study was successful at predicted target gene candidates of all differentially […]

RNAhybrid institution(s)
Center for Biotechnology, CeBiTec, Universität Bielefeld, Bielefeld, Germany
RNAhybrid funding source(s)
Supported by the Deutsche Forschungsgemeinschaft, Bioinformatics Initiative.

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