RNAhybrid specifications
Information
| Unique identifier | OMICS_00416 |
|---|---|
| Interface | Web user interface, Application programming interface |
| Restrictions to use | None |
| Input data | A miRNA sequence or a RNA sequence. |
| Computer skills | Basic |
| Version | 2.1.2 |
| Stability | Stable |
| Source code URL | https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz |
| Maintained | Yes |
Taxon
-
Animals
- Drosophila melanogaster
Maintainer
- person_outline Marc Rehmsmeier <>
Information
| Unique identifier | OMICS_00416 |
|---|---|
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Computer skills | Advanced |
| Stability | Stable |
| Source code URL | https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz |
Taxon
-
Animals
- Drosophila melanogaster
Download
Versioning
Add your version
Maintainer
RNAhybrid article
RNAhybrid citations
(3)[…] expression by default., to predict the potential targeted genes of mirna, the targeted mrnas of differentially expressed known and novel mirnas were predicted by combining miranda [24] and rnahybrid [25] to select and assess overlapping predicted targets between each program. briefly, 3′utr of an. gambiae downloaded from vectorbase were used for the prediction. the targets showing […]
Identification of exosomes and its signature miRNAs of male and female Cynoglossus semilaevis
[…] of 0.01; and (ii) fold change expression—a minimum 2-fold difference in either direction was required., the target genes of selected mirnas were predicted with three software: miranda53, pita54 and rnahybrid55. genes with total score ≥ 90 and total energy < −15 kmol were predicted as targets with mirnada. genes with combined interaction energy < 10 were considered as targets in pita. […]
Comparative profiling of differentially expressed microRNAs between the follicular and luteal phases ovaries of goats
[…] the normalized expression of a certain mirna was all lower than 1 in two libraries, further differential expression analysis was conducted without this mirna for the reason of its low expression., rnahybrid software was performed to predict target gene of mirna in the sequencing. go enrichment analysis in our study was successful at predicted target gene candidates of all differentially […]
RNAhybrid reviews
Be the first to review RNAhybrid
