RNAhybrid specifications

Information


Unique identifier OMICS_00416
Interface Web user interface, Application programming interface
Restrictions to use None
Input data A miRNA sequence or a RNA sequence.
Computer skills Basic
Version 2.1.2
Stability Stable
Source code URL https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz
Maintained Yes

Taxon


  • Animals
    • Drosophila melanogaster

Maintainer


  • person_outline Marc Rehmsmeier <>

Information


Unique identifier OMICS_00416
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Source code URL https://bibiserv.cebitec.uni-bielefeld.de/applications/rnahybrid/resources/downloads/RNAhybrid-2.1.2.tar.gz

Taxon


  • Animals
    • Drosophila melanogaster

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Maintainer


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RNAhybrid article

RNAhybrid citations

 (3)
2018
PMCID: 5898052

[…] expression by default., to predict the potential targeted genes of mirna, the targeted mrnas of differentially expressed known and novel mirnas were predicted by combining miranda [24] and rnahybrid [25] to select and assess overlapping predicted targets between each program. briefly, 3′utr of an. gambiae downloaded from vectorbase were used for the prediction. the targets showing […]

2017
PMCID: 5429842

[…] of 0.01; and (ii) fold change expression—a minimum 2-fold difference in either direction was required., the target genes of selected mirnas were predicted with three software: miranda53, pita54 and rnahybrid55. genes with total score ≥ 90 and total energy < −15 kmol were predicted as targets with mirnada. genes with combined interaction energy < 10 were considered as targets in pita. […]

2016
PMCID: 4993730

[…] the normalized expression of a certain mirna was all lower than 1 in two libraries, further differential expression analysis was conducted without this mirna for the reason of its low expression., rnahybrid software was performed to predict target gene of mirna in the sequencing. go enrichment analysis in our study was successful at predicted target gene candidates of all differentially […]

RNAhybrid institution(s)
Center for Biotechnology, CeBiTec, Universität Bielefeld, Bielefeld, Germany
RNAhybrid funding source(s)
Supported by the Deutsche Forschungsgemeinschaft, Bioinformatics Initiative.

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