RNAither specifications

Unique identifier:
OMICS_12186
Interface:
Command line interface
Input data:
RNAither provides a function to generate a suitable input text file for the pipeline from the experimental output data. It contains a header describing the experiment, and a table containing, for each well or spot, the spot number and type (e.g. control or empty), the siRNA and/or gene name, the signal intensities (default is two channels), the plate and experiment number and the position of the well on the plate, as well as, if available, SDs and/or background intensity of the signal values.
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Version:
2.20.0
Requirements:
topGO, RankProd, prada

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RNAither support

Documentation

Maintainer

  • Lars Kaderali <>

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Publications

Institution(s)

Viroquant Research Group Modeling, University of Heidelberg, Heidelberg, Germany; Theoretical Bioinformatics, German Cancer Research Center, Heidelberg, Germany

Funding source(s)

German Federal Ministry of Education and Research, BMBF, grant number 01313923 (FORSYS/Viroquant)

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