RNAlien specifications

Information


Unique identifier OMICS_13442
Name RNAlien
Interface Web user interface
Restrictions to use None
Input data A single protein sequence
Input format FASTA
Output data Evaluation results for the constructed covariance model, stockholm alignment, taxonomnic tree of the organsims
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Florian Eggenhofer <>

Information


Unique identifier OMICS_13442
Name RNAlien
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A single protein sequence
Input format FASTA
Output data Summary for construction process, tool versions, iteration info, evaluation results, Result covariance model, Result stockholm alignment, Result fasta, contains RNAz and cmstat output for result-files, contains non-iteration specific log files, iteration directories
Output format FASTA, CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages Haskell
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.1
Stability Stable
Requirements inference of RNA alignments, RNAcode, Locarna, RNAz, ViennaRNA
Maintained Yes

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Maintainer


  • person_outline Florian Eggenhofer <>

Publication for RNAlien

RNAlien institution(s)
Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria; Bioinformatics Group, Department of Computer Science University of Freiburg, Georges-Kohler-Allee, Freiburg, Germany; Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria; Bioinformatics Group, Department of Computer Science, University of Leipzig, Leipzig, Germany; Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany
RNAlien funding source(s)
This work was supported by Austrian Fonds zur Forderung der wissenschaftlichen Forschung; project Doktoratskolleg RNA Biology [W1207-B09]; project ‘SFB F43 RNA regulation of the transcriptome’; Swiss National Science Foundation [project CRSII3 154471/1]; Deutsche Forschungsgemeinschaft [BA 2168/4-3 SPP 1395 InKoMBio].

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