RNAlien specifications

Unique identifier:
OMICS_13442
Restrictions to use:
None
Input format:
FASTA
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
A single protein sequence
Output data:
Evaluation results for the constructed covariance model, stockholm alignment, taxonomnic tree of the organsims
Stability:
Stable

RNAlien specifications

Unique identifier:
OMICS_13442
Interface:
Command line interface
Input data:
A single protein sequence
Output data:
Summary for construction process, tool versions, iteration info, evaluation results, Result covariance model, Result stockholm alignment, Result fasta, contains RNAz and cmstat output for result-files, contains non-iteration specific log files, iteration directories
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.1.1
Requirements:
inference of RNA alignments, RNAcode, Locarna, RNAz, ViennaRNA
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Output format:
FASTA, CSV
Programming languages:
Haskell
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

RNAlien distribution

download

RNAlien support

Maintainer

  • Florian Eggenhofer <>
  • Florian Eggenhofer <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria; Bioinformatics Group, Department of Computer Science University of Freiburg, Georges-Kohler-Allee, Freiburg, Germany; Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria; Bioinformatics Group, Department of Computer Science, University of Leipzig, Leipzig, Germany; Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany

Funding source(s)

This work was supported by Austrian Fonds zur Forderung der wissenschaftlichen Forschung; project Doktoratskolleg RNA Biology [W1207-B09]; project ‘SFB F43 RNA regulation of the transcriptome’; Swiss National Science Foundation [project CRSII3 154471/1]; Deutsche Forschungsgemeinschaft [BA 2168/4-3 SPP 1395 InKoMBio].

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools