RNAMLview specifications

Information


Unique identifier OMICS_09292
Name RNAMLview
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Fabrice Jossinet

Publication for RNAMLview

RNAMLview citation

library_books

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

2005
Nucleic Acids Res
PMCID: 1087784
PMID: 15860776
DOI: 10.1093/nar/gki535

[…] nces and 805 23S rRNA sequences were aligned; for Eukarya (E), 5190 18S rRNA sequences and 133 28S rRNA sequences were considered (). The sequence alignments were analyzed using COSEQ, BioEdit () and RNAMLview to determine covariations and substitutions at sequence positions corresponding to non-WC pairs observed in crystal structures and to compare these to the corresponding Isostericity Matrices […]

RNAMLview institution(s)
Department of Chemistry and Chemical Biology, Rutgers University, NJ, USA; Institut de Biologie Moléculaire et Cellulaire du CNRS, Université Louis Pasteur, Strasbourg, France; Chemistry Department, Center for Biomolecular Sciences, Bowling Green State University, Bowling Green, OH, USA

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