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RNAmotifs | Prediction of multivalent RNA motifs that control alternative splicing

Recognizes clusters of motifs underlying regulatory principles of alternative splicing and alternative polyadenylation. RNAmotifs computes an enrichment score (ES) on the super-imposed sequences of all the features. It finds possible short motifs, convolutes their signals with a short sliding window.

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RNAmotifs classification

RNAmotifs specifications

Unique identifier:
OMICS_02287
Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Alternative name:
RNAmotifs2
Interface:
Command line interface
Operating system:
Unix/Linux
License:
MIT License
Version:
2.0.1
Maintained:
Yes

RNAmotifs distribution

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RNAmotifs support

Documentation

Maintainers

  • Jernej Ule <>
  • Gregor Rot <>

Additional information

https://github.com/matteocereda/RNAmotifs

Credits

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Publications

Institution(s)

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, Zurich, Switzerland; MRC Laboratory of Molecular Biology, Cambridge, UK; Institut de Biologie de l’ENS (IBENS), Paris, France; UCL Institute of Neurology, Queen Square, London, UK; The Francis Crick Institute, London, UK; European Molecular Biology Laboratory, Heidelberg, Germany; Institute of Stem Cell Research, Helmholtz Center Munich, Neuherberg, Germany; Institute of Molecular Biology, Mainz, Germany; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia

Funding source(s)

Supported by the European Research Council (206726-CLIP and 617837-Translate) and the Slovenian Research Agency (J7-5460); and by the Swiss National Science Foundation (grant 31003A_160095).

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