RNAMotifScan statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

RNAMotifScan specifications


Unique identifier OMICS_08363
Name RNAMotifScan
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Shaojie Zhang <>

Publication for RNAMotifScan

RNAMotifScan in publications

PMCID: 3905863
PMID: 24005040
DOI: 10.1093/nar/gkt795

[…] ignores sequence information, which means exclusion of isostericity information. it also ignores variations of base pair interactions because of the isomorphism restrictions of the algorithm., rnamotifscan, an approach developed by zhong et al. (), circumvents these drawbacks. it takes base pair isostericity, crossing base pairs, and multi-pairing into account. zhong et al. use annotation […]

PMCID: 3273805
PMID: 21976732
DOI: 10.1093/nar/gkr804

[…] optimal superimposition (). therefore, base pairing information should also be considered when comparing rna structural motifs. the recently developed rna structural motif identification tool, rnamotifscan, searches for structural fragments with similar base pairing pattern given by the query, and has uncovered new motif occurrences that have similar base pairing pattern […]

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RNAMotifScan institution(s)
School of Electrical Engineering and Computer Science, University of Central Florida, Orlando, FL, USA

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