rnaQUAST specifications

Unique identifier:
OMICS_11513
Interface:
Command line interface
Input data:
rnaQUAST takes assembled transcripts as an input and maps them to the reference genome using either BLAT or GMAP.
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
1.2.0
Requirements:
GMAP (or BLAT), BLASTN, gffutils, matplotlib

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rnaQUAST support

Documentation

Maintainer

  • Andrey D. Prjibelski <>

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Publications

Institution(s)

Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia; Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia; Research and Development Department, EMC, St. Petersburg, Russia

Funding source(s)

This work was supported by EMC Research and Development Department and St. Petersburg State University [grant number 15.61.951.2015].

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