rnaQUAST specifications

Information


Unique identifier OMICS_11513
Name rnaQUAST
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data rnaQUAST takes assembled transcripts as an input and maps them to the reference genome using either BLAT or GMAP.
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2.0
Stability Stable
Requirements GMAP (or BLAT), BLASTN, gffutils, matplotlib
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Andrey D. Prjibelski <>

Publication for rnaQUAST

rnaQUAST institution(s)
Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia; Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia; Research and Development Department, EMC, St. Petersburg, Russia
rnaQUAST funding source(s)
This work was supported by EMC Research and Development Department and St. Petersburg State University [grant number 15.61.951.2015].

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