RNAscClust specifications


Unique identifier OMICS_16457
Name RNAscClust
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A set of multiple structural alignments of RNA sequences.
Output data The secondary structure for the sequence from the organism of interest in each alignment, the candidate clusters.
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.0
Stability Stable
Source code URL http://www.bioinf.uni-freiburg.de/Software/RNAscClust/Releases/RNAscClust-1.0.0.tar.gz
Maintained Yes


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  • person_outline Rolf Backofen <>

Publication for RNAscClust


RNAscClust: clustering RNA sequences using structure conservation and graph based motifs

2017 Bioinformatics
PMID: 28334186
DOI: 10.1093/bioinformatics/btx114
RNAscClust funding source(s)
This work was supported by Innovation Fund Denmark, the Danish Center for Scientific Computing (DCSC/DeiC), the Danish Cancer Society and by the Deutsche Forschungsgemeinschaft (DFG, MO 2402/1- 1, BA 2168/4-2, BA 2168/3-3 A).

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