RNASeq-er statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

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RNASeq-er specifications


Unique identifier OMICS_17293
Name RNASeq-er
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output format JSON
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.8.5
Stability Stable
Maintained Yes


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  • person_outline Robert Petryszak <>
  • person_outline Robert Petryszak <>

Publication for RNASeq-er

RNASeq-er in publication

PMCID: 5870697
PMID: 28369191
DOI: 10.1093/bioinformatics/btx143

[…] quantification of all public bulk (and in the near future also single-cell) rna-seq runs in 264 species in european nucleotide archive, using representational state transfer., results: the rnaseq-er api (application programming interface) enables ontology-powered search for and retrieval of cram, bigwig and bedgraph files, gene and exon expression quantification matrices (fragments per […]

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RNASeq-er institution(s)
Functional Genomics Group, European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK
RNASeq-er funding source(s)
Supported by BBSRC and by the European Molecular Biology Laboratory (EMBL) member states.

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