RNASeqBias statistics

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Associated diseases

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RNASeqBias specifications

Information


Unique identifier OMICS_26079
Name RNASeqBias
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
Genominator, ShortRead, gam, gtools
Maintained No

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RNASeqBias in publication

PMCID: 3149584
PMID: 21771300
DOI: 10.1186/1471-2105-12-290

[…] we used the median cdna length, cdna gc content and dinucleotide frequencies as gene-level summaries., the gam correction method and facilitating functions were implemented in an r package (rnaseqbias) and this package can be obtained as additional file , and also from http://bioinformatics.med.yale.edu/group/. this gam-based correction method is computationally efficient. it takes ~4-5 […]


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