RNASeqPower pipeline

RNASeqPower specifications

Information


Unique identifier OMICS_15095
Name RNASeqPower
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.14.0
Stability Stable
Maintained Yes

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Documentation


Publication for RNASeqPower

RNASeqPower IN pipeline

2017
PMCID: 5414158
PMID: 28464817
DOI: 10.1186/s12920-017-0270-5

[…] was performed using deseq2 [16]. this software was also used to create a matrix of normalized expression for each gene by calculating fragments per million mapped fragments (fpm). utilizing the rnaseqpower package [17] in r, we estimated that for alpha of 0.05 and power (1-beta) of 0.8, with an estimated biological variation coefficient of 0.5 (humans), and around 30 cases of poaf, we could […]

RNASeqPower institution(s)
Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Chinahester, MN, USA; Mayo Vaccine Research Group, Mayo Clinic, Chinahester, MN, USA; Program in Translational Immunovirology and Biodefense, Mayo Clinic, Chinahester, MN, USA
RNASeqPower funding source(s)
This work was funded through the Center for Individualized Medicine at Mayo Clinic (112222) and federal funds from the National Institute of Health, under contract number U01 AI089859.

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