RNAseqPS statistics

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RNAseqPS specifications

Information


Unique identifier OMICS_07222
Name RNAseqPS
Alternative name RnaSeqSampleSize
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Maintained No

Documentation


Maintainer


This tool is not maintained anymore.

Information


Unique identifier OMICS_07222
Name RNAseqPS
Alternative name RnaSeqSampleSize
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.12.0
Stability Stable
Requirements
BiocStyle, edgeR, R(>=2.10), biomaRt, knitr, KEGGREST, matlab, RnaSeqSampleSizeData, heatmap3, Rcpp(>=0.11.2)
Maintained Yes

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Documentation


Maintainer


  • person_outline Shilin Zhao <>

Publications for RnaSeqSampleSize

RNAseqPS in publications

 (2)
PMCID: 5415728
PMID: 28468606
DOI: 10.1186/s12859-017-1648-2

[…] test and likelihood ratio test (lrt). li et al. [] proposed an exact test method for calculating sample size at a single gene level or the marginal level, which is implemented in a web tool called rnaseqps [] and an r package called rnaseqsamplesize. other studies have been published for sample size calculation and power estimation at a data set level by evaluating the proportion of true […]

PMCID: 5122405
PMID: 27220887
DOI: 10.18632/oncotarget.9555

[…] for eight differentially expressed lncrna transcripts, six up-regulated and two down-regulated genes were identified., we estimated the statistical power for detecting significantly degs using ‘rnaseqsamplesize’ [] and ‘ssizerna’ []. the genes with minimun read counts > 10 across all individuals (n = 11,076) genes was used. we also estimated the distributions of gene read count […]


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RNAseqPS institution(s)
Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, USA; Department of Statistics, National Cheng Kung University, Tainan, Taiwan

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